Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   RJD38_RS10850 Genome accession   NZ_CP134271
Coordinates   2356365..2357711 (+) Length   448 a.a.
NCBI ID   WP_406852468.1    Uniprot ID   -
Organism   Vibrio scophthalmi strain 20FBVib0200     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2351365..2362711
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJD38_RS10835 (RJD38_10835) - 2351916..2353229 (+) 1314 WP_065545580.1 anaerobic C4-dicarboxylate transporter family protein -
  RJD38_RS10845 (RJD38_10845) uvrB 2354027..2356057 (+) 2031 WP_005593858.1 excinuclease ABC subunit UvrB -
  RJD38_RS10850 (RJD38_10850) luxO 2356365..2357711 (+) 1347 WP_406852468.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  RJD38_RS10855 (RJD38_10855) luxU 2357732..2358070 (+) 339 WP_065545985.1 quorum-sensing phosphorelay protein LuxU -
  RJD38_RS10860 (RJD38_10860) - 2358056..2358943 (-) 888 WP_065545579.1 YvcK family protein -
  RJD38_RS10865 (RJD38_10865) moaA 2359262..2360251 (+) 990 WP_065430003.1 GTP 3',8-cyclase MoaA -
  RJD38_RS10870 (RJD38_10870) moaB 2360342..2360854 (+) 513 WP_005593866.1 molybdenum cofactor biosynthesis protein B -
  RJD38_RS10875 (RJD38_10875) moaC 2360879..2361358 (+) 480 WP_005593869.1 cyclic pyranopterin monophosphate synthase MoaC -
  RJD38_RS10880 (RJD38_10880) moaD 2361355..2361600 (+) 246 WP_005593871.1 molybdopterin synthase sulfur carrier subunit -
  RJD38_RS10885 (RJD38_10885) moaE 2361602..2362057 (+) 456 WP_005593872.1 molybdopterin synthase catalytic subunit MoaE -
  RJD38_RS10890 (RJD38_10890) - 2362266..2362682 (+) 417 WP_005593875.1 CBS domain-containing protein -

Sequence

Protein


Download         Length: 448 a.a.        Molecular weight: 49773.90 Da        Isoelectric Point: 5.1536

>NTDB_id=879572 RJD38_RS10850 WP_406852468.1 2356365..2357711(+) (luxO) [Vibrio scophthalmi strain 20FBVib0200]
MVEDTASVAALYRSYLTPLGIDINIVGTGRDAIESLEFRTPDLILLDLRLPDMTGMDVLQAVKQQNPDVPVIFMTAHGSI
DTAVEAMRLGAQDFLIKPCEADRLRVTVNNAIRKVTKLRTEAGTNQGYQGFIGSSHTMQAVYRTIDSAATSKASIFITGE
SGTGKEVCAEALHATSNRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDREGAAELADGGTLFLDELCEMDLDLQ
TKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRERGEDVIEIAYSLLGFM
SKEEGKDFIRLSPEVVDRFARYEWPGNVRQLQNVLRNVVVLNNGREIRLDMLPPPLNQPCEGVSRSVNEETETLSVHDIF
PLWLTEKNAIKLAIKACEGNIPKAAGYLDVSPSTLYRKLQGWNEKETK

Nucleotide


Download         Length: 1347 bp        

>NTDB_id=879572 RJD38_RS10850 WP_406852468.1 2356365..2357711(+) (luxO) [Vibrio scophthalmi strain 20FBVib0200]
ATGGTAGAAGATACCGCCTCTGTGGCGGCACTCTATCGTTCTTATCTTACGCCGCTGGGTATCGATATTAATATCGTCGG
TACCGGGCGCGATGCGATTGAAAGTCTTGAATTTCGCACACCCGATTTGATCTTGCTCGATTTGCGCTTGCCCGATATGA
CAGGGATGGATGTTCTACAAGCGGTCAAACAGCAAAACCCGGATGTGCCAGTTATTTTCATGACTGCTCATGGCTCGATC
GATACCGCGGTTGAGGCGATGCGGTTAGGCGCACAAGATTTCTTGATCAAACCCTGTGAAGCGGACCGACTGCGCGTGAC
GGTGAACAATGCGATTCGCAAAGTAACGAAGCTAAGAACCGAAGCGGGAACCAATCAAGGCTATCAAGGGTTTATCGGCA
GTAGTCATACCATGCAAGCGGTCTATCGGACGATTGACTCGGCGGCGACCAGTAAAGCGAGTATTTTCATTACTGGTGAA
AGTGGTACCGGTAAAGAGGTGTGTGCAGAGGCATTGCATGCCACCAGTAATCGTGGCGATAAACCGTTTATTGCCATCAA
CTGTGCTGCCATTCCTAAAGACTTGATTGAAAGTGAATTGTTTGGTCACGTTAAAGGGGCCTTTACTGGCGCGGCAACCG
ATCGTGAAGGCGCTGCGGAACTGGCCGATGGCGGAACCCTGTTTTTGGATGAATTGTGCGAAATGGATCTGGACTTGCAG
ACCAAATTACTGCGTTTTATCCAAACCGGAACCTTTCAAAAGGTGGGTTCATCCAAAATGAAAAGTGTGGATGTACGTTT
TGTTTGTGCAACCAACCGAGACCCATGGAAAGAAGTACAGGAAGGGCGCTTTCGTGAAGACTTGTATTATCGCCTTTACG
TTATCCCACTGCACTTACCACCTTTGCGTGAGCGTGGCGAAGATGTCATTGAAATTGCATACTCCTTGCTAGGCTTTATG
TCGAAAGAAGAAGGCAAAGATTTTATCCGTCTCTCGCCGGAAGTGGTTGATCGCTTTGCTCGCTATGAGTGGCCTGGTAA
TGTGCGTCAATTGCAGAACGTACTGAGAAATGTGGTGGTGCTTAACAATGGCCGTGAAATTCGCTTAGATATGTTACCAC
CACCGTTGAACCAACCTTGTGAGGGCGTGTCACGCAGCGTCAATGAAGAAACAGAGACCTTGTCGGTACACGATATTTTC
CCGTTATGGCTGACGGAAAAAAATGCCATTAAGCTGGCGATAAAAGCGTGTGAGGGAAATATTCCGAAAGCGGCTGGTTA
TCTCGATGTTAGCCCATCGACACTATACCGTAAGCTACAAGGTTGGAATGAAAAAGAGACCAAGTAA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(132-297)

Bacterial regulatory protein, Fis family (HTH_8)

(402-440)

Response regulator receiver domain (Response_reg)

(2-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

85.393

99.33

0.848