Detailed information NTG0879571

Bioinformatically predicted

Overview

• Name: chiS
• Type: Regulator
• Locus tag: RJD38_RS09195
• Genome accession: NZ_CP134271
• Coordinates: 2006696..2010079 (-)
• Length: 1127 a.a.
• NCBI ID: WP_065545692.1
• Uniprot ID: -
• Organism: Vibrio scophthalmi strain 20FBVib0200
• Function: chitin sensor (predicted from homology) Competence regulation

Genomic Context

Location: 2001696..2015079

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RJD38_RS09180 (RJD38_09180)	-	2002184..2003209 (-)	1026	WP_005593235.1	ABC transporter permease	-
RJD38_RS09185 (RJD38_09185)	-	2003212..2004198 (-)	987	WP_005593236.1	ABC transporter permease	-
RJD38_RS09190 (RJD38_09190)	-	2004371..2006053 (-)	1683	WP_005593237.1	ABC transporter substrate-binding protein	-
RJD38_RS09195 (RJD38_09195)	chiS	2006696..2010079 (-)	3384	WP_065545692.1	response regulator	Regulator
RJD38_RS09200 (RJD38_09200)	rsmC	2010273..2011295 (-)	1023	WP_009733666.1	16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC	-
RJD38_RS09205 (RJD38_09205)	-	2011392..2012477 (-)	1086	WP_005593240.1	AI-2E family transporter	-
RJD38_RS09215 (RJD38_09215)	hemL	2012821..2014113 (-)	1293	WP_005593243.1	glutamate-1-semialdehyde 2,1-aminomutase	-
RJD38_RS09220 (RJD38_09220)	erpA	2014399..2014740 (+)	342	WP_005593244.1	iron-sulfur cluster insertion protein ErpA	-

Sequence

Protein

• Length: 1127 a.a.
• Molecular weight: 127470.60 Da
• Isoelectric Point: 5.5251

>NTDB_id=879571 RJD38_RS09195 WP_065545692.1 2006696..2010079(-) (chiS) [Vibrio scophthalmi strain 20FBVib0200]
MFKLYRKQRFKRLQNTLMLAFLALSITPLTVIALFFLNSHSQDLQEQSTSHLLSVRDSKHQQIVDYLDARESEVMGFVRS
ELAYASGGRFYGLVNAFQSLGLDINQARDYAQQRYIQGSGNQIKTSILPQSDIYNGTERYRLLHTRYHRAYLELLKRSDF
DDILLVDINGNVTYSIYKNDNFGTNLISGKYKDDNLGLAFQKLKKNVTSVRKTNEDYTPVFFSDFETHHGKSYAWIGAPI
IQQGYLHSYAMFRLPNNSLTKLMADNNNIWSIKTLLVGEDHKPRTLAYSQEEVDNSLTIIDRAFNNPASVGTFTNALGEE
IIAAYSHIQTKGIDWALVVEVAEKEAFARVQQLERLFVFAMLFAIIVVVIASHYLSNFITLPLLKLTWSAEKASAGDLNA
EINTQRKDEIGRLAIAFDRMQRSIRDKIQLIREQNEELEDNLTIIQKKNDELQLANKLKDEFLATTSHELRTPLHGMIGI
AEALISGASGPITADHKYQLDIIISSGQRLTTLVDDLLDYHKMRYGNLDIETCGVDLSSATRLVLELSSHLLGNKQIRII
NQVAAEPVWVAADPQRLEQVLYNLVGNAIKYTREGKIVISATVVDDKIRVQVVDTGQGIPADQIEHIFEPLIQASDDASR
YRQGAGLGLSISRQLVELMDGSLYVSSQPMVGTTFSFTLPIATEAQIAQASHNDSIHFKVPESYELEETSISSLPENPDG
QLLLVVDDEPVNLRVLDSFLRIAGYRVRTAKDGFEALQQIEQERPELVLLDVMMPGLSGYQVCETIRENYSQSELPVIML
TALNQPDDRIRGFNSGANDYLSKPFNKQELAARILVHLSASQAELRKAENHRLQQELKQRAAVEASLLETQGRLLEQLES
APEAIICIRDDGRIRFANEAAARLFKRSTEQLKRSNADEILGPKFLDVEQEHYCGKVDIYVEDTRQHLDADILRLPLESG
LKSMYIFDNGGGANAVRIHNLETAIEALSSYAFDGDKGKLQELKELGGEFTRLADRVTGEHKSKQEVMREVLVDAMTTAI
NYWENSSGQTKFAFAEQSGLWRVYLDRSTLQTRTLDKYLRIETLPKTPRWRTVLSSLEYILDNSHEMNAERALIEELRDK
LQHLLTS

Nucleotide

• Length: 3384 bp

>NTDB_id=879571 RJD38_RS09195 WP_065545692.1 2006696..2010079(-) (chiS) [Vibrio scophthalmi strain 20FBVib0200]
ATGTTTAAGTTGTATCGAAAACAAAGATTCAAACGCCTGCAAAATACACTCATGCTGGCATTTTTGGCGCTCAGTATCAC
GCCTCTAACTGTGATCGCCCTCTTCTTCCTCAATTCGCACAGCCAAGATCTCCAAGAGCAAAGCACTTCACATCTTCTCT
CTGTGCGAGATAGTAAGCATCAACAGATTGTTGATTATCTTGATGCACGCGAATCGGAAGTGATGGGGTTTGTCCGTTCA
GAGCTCGCTTACGCCAGTGGCGGCCGCTTCTATGGCTTAGTCAATGCGTTCCAAAGCCTCGGTTTGGACATCAACCAGGC
TCGTGATTATGCGCAGCAACGCTATATTCAAGGCTCTGGGAATCAGATTAAAACGTCAATTTTGCCGCAATCGGACATTT
ATAACGGTACAGAGCGCTATCGCTTACTACATACTCGTTATCATCGCGCCTATTTAGAACTGTTAAAACGTTCTGATTTT
GACGACATTTTGTTGGTCGATATTAACGGCAACGTTACCTATTCCATCTATAAAAACGATAACTTCGGTACCAACCTAAT
CTCTGGTAAATACAAAGACGATAACTTAGGTTTGGCCTTTCAAAAACTGAAGAAAAATGTCACGTCGGTACGTAAGACCA
ATGAAGACTACACGCCAGTGTTCTTCTCTGACTTCGAAACTCATCATGGAAAATCTTACGCTTGGATCGGTGCGCCAATC
ATCCAACAAGGCTACCTACATAGCTACGCGATGTTCCGTCTACCAAATAACAGCCTGACCAAATTGATGGCTGACAATAA
CAACATTTGGTCGATAAAAACCTTACTGGTTGGTGAAGACCACAAGCCACGCACCCTTGCTTATAGCCAAGAAGAGGTTG
ATAACAGCCTGACTATTATCGATCGTGCCTTTAATAATCCAGCGTCAGTAGGCACCTTTACCAATGCTCTCGGTGAAGAG
ATTATTGCCGCCTACAGCCATATCCAAACCAAAGGTATTGACTGGGCACTTGTGGTGGAAGTCGCTGAAAAAGAAGCCTT
TGCACGTGTACAACAACTTGAACGACTGTTTGTTTTTGCCATGCTGTTTGCCATTATCGTGGTGGTCATCGCTTCGCACT
ACCTCTCCAACTTCATCACGCTACCATTATTGAAATTAACATGGTCAGCAGAAAAAGCATCAGCCGGTGATCTCAATGCG
GAAATCAACACTCAACGTAAAGATGAGATTGGCCGACTCGCCATTGCATTTGATCGCATGCAGCGTTCGATTCGTGACAA
AATCCAGCTTATTCGCGAACAAAATGAAGAGCTGGAAGATAACCTCACGATAATCCAGAAGAAAAATGATGAATTGCAGC
TGGCCAACAAACTTAAAGATGAGTTTCTTGCCACCACTTCACACGAATTACGCACCCCACTGCATGGCATGATTGGCATT
GCAGAAGCGCTTATTTCGGGTGCAAGTGGGCCGATTACTGCCGATCATAAATATCAACTCGATATTATCATCAGCAGCGG
ACAACGCTTAACCACCTTGGTTGACGATCTACTCGACTATCACAAAATGCGTTATGGCAATCTTGACATCGAAACCTGTG
GTGTCGACTTATCGAGTGCCACTCGCCTTGTGCTAGAGCTCTCGTCACACCTACTGGGTAACAAACAGATCCGCATTATT
AACCAAGTGGCGGCTGAGCCAGTTTGGGTTGCGGCGGATCCACAACGTCTTGAACAGGTGCTTTATAATCTCGTTGGTAA
CGCGATCAAATACACCCGCGAAGGTAAAATTGTTATTTCTGCTACGGTAGTAGACGATAAAATCCGCGTGCAAGTGGTTG
ATACAGGCCAAGGCATTCCTGCCGACCAAATCGAGCATATTTTCGAACCATTAATCCAAGCCAGCGATGATGCCAGCCGC
TACCGTCAGGGTGCAGGCCTTGGTCTGTCTATTAGCCGCCAGTTAGTTGAATTGATGGATGGCTCACTCTATGTCAGCAG
CCAACCAATGGTCGGCACAACATTTAGCTTTACCTTACCGATTGCCACCGAAGCGCAAATCGCGCAAGCGAGCCATAATG
ATAGCATCCACTTTAAAGTGCCTGAGAGCTATGAACTAGAAGAAACAAGCATCAGTAGCCTACCTGAGAACCCTGATGGT
CAATTGCTGCTTGTTGTGGATGATGAACCGGTAAACTTAAGAGTATTGGACAGTTTCTTAAGAATCGCGGGCTATCGTGT
ACGCACGGCGAAAGATGGGTTTGAAGCCTTACAACAAATTGAACAAGAAAGACCGGAACTGGTGCTACTGGATGTGATGA
TGCCGGGCTTAAGTGGCTATCAAGTCTGTGAAACCATTCGTGAAAATTACAGCCAGTCAGAATTGCCTGTCATTATGCTA
ACCGCCTTAAACCAGCCTGATGACCGTATTCGTGGCTTCAATTCCGGCGCCAATGACTACTTATCAAAACCATTCAATAA
ACAAGAGCTGGCGGCCCGTATTTTAGTGCACCTCTCAGCAAGCCAAGCTGAATTGCGTAAAGCGGAAAACCACCGTTTAC
AGCAGGAATTAAAACAACGCGCCGCCGTGGAAGCGAGCTTGCTCGAAACACAAGGTCGATTGTTAGAACAACTTGAATCT
GCTCCAGAAGCGATAATCTGTATCCGGGACGATGGTCGAATTCGCTTTGCTAACGAAGCGGCAGCACGACTGTTTAAACG
CAGCACCGAACAGCTAAAACGTTCAAATGCAGACGAAATTTTAGGCCCTAAGTTCCTTGATGTTGAGCAAGAGCACTATT
GCGGTAAGGTTGATATCTACGTTGAGGATACCCGCCAACATCTCGATGCCGACATTCTGCGTCTGCCACTGGAATCAGGC
CTTAAGTCAATGTACATCTTTGATAATGGCGGCGGCGCCAATGCGGTGCGTATTCACAACCTAGAGACCGCCATAGAGGC
ACTTTCAAGCTATGCGTTTGACGGTGACAAGGGCAAGTTACAAGAGCTCAAAGAATTAGGCGGTGAATTTACTCGCCTTG
CTGACCGTGTCACAGGTGAACATAAGTCGAAACAGGAAGTGATGCGCGAAGTATTGGTGGATGCAATGACAACCGCAATC
AATTACTGGGAAAACAGTTCAGGCCAAACCAAGTTTGCCTTTGCCGAGCAAAGTGGTTTATGGCGCGTCTATCTAGACCG
CAGCACTCTGCAAACGCGTACCTTGGATAAATACCTACGTATCGAAACGCTACCGAAAACACCACGTTGGCGTACCGTAC
TGAGCTCACTGGAATATATTCTTGATAACAGCCACGAGATGAATGCCGAACGAGCACTGATTGAAGAGCTGCGAGATAAG
CTTCAACACCTACTGACCAGTTAG

Domains

Predicted by InterproScan.

• HAMP domain (HAMP) (375-426)

• Response regulator receiver domain (Response_reg) (724-834)

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (573-681)

• His Kinase A (phospho-acceptor) domain (HisKA) (459-524)

• PAS domain (PAS_8) (878-925)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
chiS	Vibrio cholerae strain A1552	74.202	100	0.743