Detailed information NTG0879563

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: RJD38_RS07330
• Genome accession: NZ_CP134271
• Coordinates: 1604801..1605856 (+)
• Length: 351 a.a.
• NCBI ID: WP_257784174.1
• Uniprot ID: -
• Organism: Vibrio scophthalmi strain 20FBVib0200
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 1599801..1610856

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RJD38_RS07310 (RJD38_07310)	metJ	1599828..1600145 (+)	318	WP_005593642.1	met regulon transcriptional regulator MetJ	-
RJD38_RS07315 (RJD38_07315)	-	1600302..1601576 (-)	1275	WP_065545812.1	malic enzyme-like NAD(P)-binding protein	-
RJD38_RS07320 (RJD38_07320)	rpmE	1601823..1602041 (-)	219	WP_005593644.1	50S ribosomal protein L31	-
RJD38_RS07325 (RJD38_07325)	priA	1602360..1604561 (+)	2202	WP_065545811.1	primosomal protein N'	-
RJD38_RS07330 (RJD38_07330)	cytR	1604801..1605856 (+)	1056	WP_257784174.1	DNA-binding transcriptional regulator CytR	Regulator
RJD38_RS07335 (RJD38_07335)	-	1606083..1606619 (+)	537	WP_065545810.1	SPOR domain-containing protein	-
RJD38_RS07340 (RJD38_07340)	rfaH	1607054..1607593 (+)	540	WP_065545809.1	transcription/translation regulatory transformer protein RfaH	-
RJD38_RS07345 (RJD38_07345)	wecB	1607948..1609075 (+)	1128	WP_367971415.1	non-hydrolyzing UDP-N-acetylglucosamine 2-epimerase	-
RJD38_RS07350 (RJD38_07350)	wecC	1609089..1610354 (+)	1266	WP_367971416.1	UDP-N-acetyl-D-mannosamine dehydrogenase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 38805.85 Da
• Isoelectric Point: 7.6849

>NTDB_id=879563 RJD38_RS07330 WP_257784174.1 1604801..1605856(+) (cytR) [Vibrio scophthalmi strain 20FBVib0200]
MAKALPPKELTKRVTFMATMKDVAQLAGVSTATVSRALMNPEKVSSATRKRVEDAVLEAGYSPNSLARNLRRNESKTIIA
IIPDICDPYYTEIIRGIEDAAMEHGYIVLLGDSGQQKRRENSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMA
CEFAPELELPTVHIDNLTSAFEVVNYLTQLGHKRIAQISGPETATLCQFRQQGYQQALRRAGITMNPTYSTFGEFTFEAG
AKAVRQLLALPEPPTAIFCHNDAMAIGAIQEAKRLGLRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMML
ELLRGHDVRAGSRLLETQLVVRKSAAPPRAL

Nucleotide

• Length: 1056 bp

>NTDB_id=879563 RJD38_RS07330 WP_257784174.1 1604801..1605856(+) (cytR) [Vibrio scophthalmi strain 20FBVib0200]
GTGGCCAAGGCGCTACCGCCAAAGGAACTAACTAAGAGGGTTACATTTATGGCGACAATGAAGGATGTTGCCCAGCTCGC
GGGAGTTTCAACAGCGACGGTATCGAGGGCGCTGATGAATCCTGAAAAAGTCTCTTCTGCCACGCGTAAGCGCGTTGAAG
ACGCTGTGTTAGAAGCTGGCTATTCCCCAAATTCTTTAGCGCGTAATTTACGCCGCAACGAATCGAAAACGATCATCGCG
ATCATTCCTGATATCTGCGATCCTTATTACACGGAGATCATTCGTGGTATTGAAGATGCAGCCATGGAGCATGGTTATAT
TGTTCTGTTAGGCGATAGCGGTCAGCAGAAAAGACGTGAAAATTCCTTTGTGAATTTGGTCTTTACTAAGCAAGCTGACG
GCATGTTGCTGCTTGGTACTGATCTGCCGTTTGATGTCAGCAAACCTGAGCAGAAAAACCTACCGCCAATGGTTATGGCG
TGTGAGTTTGCCCCTGAGCTTGAACTGCCAACGGTTCACATTGATAACCTGACCTCTGCGTTTGAAGTGGTCAACTATCT
TACTCAGCTTGGTCATAAGCGCATCGCACAAATTTCCGGGCCAGAAACGGCGACTCTGTGTCAATTCCGTCAGCAAGGCT
ATCAACAAGCATTGCGCCGCGCGGGCATTACCATGAACCCGACTTACAGCACATTTGGTGAGTTCACTTTTGAGGCGGGT
GCCAAAGCGGTCAGACAATTACTAGCACTGCCTGAGCCACCGACGGCGATTTTCTGTCATAACGATGCGATGGCGATTGG
TGCTATTCAAGAAGCAAAACGTCTTGGTTTACGGGTACCACAAGATTTATCGGTAGTGGGTTTTGATGACATTCAGTTCG
CTCAATATTGCGATCCACCGCTGACCACCATCTCACAGCCTCGTTATGAGATTGGCCGTCAAGCCATGCTGATGATGCTA
GAGTTGCTGCGTGGTCATGATGTCCGTGCGGGGTCGCGTCTATTAGAAACGCAATTAGTGGTACGTAAGAGTGCTGCGCC
ACCAAGAGCTCTCTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, lacI family (LacI) (19-64)

• Periplasmic binding protein-like domain (Peripla_BP_3) (184-344)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio cholerae C6706	94.578	94.587	0.895
cytR	Vibrio parahaemolyticus RIMD 2210633	89.053	96.296	0.858