Detailed information NTG0879554

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: RJD38_RS04475
• Genome accession: NZ_CP134271
• Coordinates: 1009000..1009983 (-)
• Length: 327 a.a.
• NCBI ID: WP_065544998.1
• Uniprot ID: A0A1C7F621
• Organism: Vibrio scophthalmi strain 20FBVib0200
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1004000..1014983

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RJD38_RS04450 (RJD38_04450)	rimM	1004029..1004583 (-)	555	WP_005593970.1	ribosome maturation factor RimM	-
RJD38_RS04455 (RJD38_04455)	rpsP	1004608..1004856 (-)	249	WP_005593968.1	30S ribosomal protein S16	-
RJD38_RS04460 (RJD38_04460)	ffh	1005068..1006447 (-)	1380	WP_005593966.1	signal recognition particle protein	-
RJD38_RS04465 (RJD38_04465)	-	1006630..1007424 (+)	795	WP_005593965.1	cytochrome C assembly family protein	-
RJD38_RS04470 (RJD38_04470)	-	1007553..1008827 (+)	1275	WP_065544999.1	HlyC/CorC family transporter	-
RJD38_RS04475 (RJD38_04475)	rpoS	1009000..1009983 (-)	984	WP_065544998.1	RNA polymerase sigma factor RpoS	Regulator
RJD38_RS04480 (RJD38_04480)	nlpD	1010061..1010981 (-)	921	WP_005598103.1	murein hydrolase activator NlpD	-
RJD38_RS04485 (RJD38_04485)	-	1010984..1011610 (-)	627	WP_009387609.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
RJD38_RS04490 (RJD38_04490)	surE	1011614..1012357 (-)	744	WP_005598101.1	5'/3'-nucleotidase SurE	-
RJD38_RS04495 (RJD38_04495)	truD	1012384..1013466 (-)	1083	WP_065544997.1	tRNA pseudouridine(13) synthase TruD	-
RJD38_RS04500 (RJD38_04500)	ispF	1013538..1014017 (-)	480	WP_040758003.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
RJD38_RS04505 (RJD38_04505)	ispD	1014021..1014743 (-)	723	WP_065430962.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 327 a.a.
• Molecular weight: 37411.48 Da
• Isoelectric Point: 4.7809

>NTDB_id=879554 RJD38_RS04475 WP_065544998.1 1009000..1009983(-) (rpoS) [Vibrio scophthalmi strain 20FBVib0200]
MSMSNTATKVEEFDLNNMETLEVEAQTAKKSASANAAAKEEYEVSNKSLDATQLYLGEIGFSPLLTAEEEVLYARRTLRG
DEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIR
LPIHVVKELNIYLRTARELSQKLDHEPTAEEIAIQLDKPVDDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDVKHSDP
EVSTQDDDIKDSLINWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILIKQGLSMEN
LFSVEDD

Nucleotide

• Length: 984 bp

>NTDB_id=879554 RJD38_RS04475 WP_065544998.1 1009000..1009983(-) (rpoS) [Vibrio scophthalmi strain 20FBVib0200]
ATGAGTATGAGCAATACAGCAACAAAAGTTGAAGAATTTGATCTCAATAACATGGAAACGTTAGAGGTTGAAGCACAAAC
CGCAAAAAAATCCGCATCAGCTAATGCAGCTGCGAAAGAAGAGTATGAGGTCTCGAATAAGAGCCTTGATGCGACGCAGC
TTTACCTTGGCGAAATCGGCTTTTCACCACTACTTACCGCAGAAGAAGAAGTGCTTTATGCTCGCCGTACCTTGCGTGGT
GATGAAGCAGCGCGTAAACGTATGATCGAAAGTAACCTGCGTTTGGTGGTGAAGATTTCTCGTCGTTACAGCAATCGTGG
TCTTGCACTGCTTGATTTGATTGAAGAAGGTAACTTAGGTCTGATCCGAGCGGTTGAAAAATTTGATCCAGAGCGTGGCT
TCCGTTTTTCAACGTATGCTACTTGGTGGATTCGTCAAACCATTGAACGTGCGTTGATGAACCAAACCCGCACAATTCGT
CTACCGATTCACGTCGTTAAAGAGCTGAATATTTATCTGCGTACCGCTCGCGAGCTTTCACAAAAGCTTGACCATGAGCC
AACGGCAGAAGAGATTGCAATTCAATTAGATAAGCCAGTTGATGATGTGAGTAAAATGCTACGCCTGAATGAGCGTATTA
GTTCGGTTGATACCCCAATTGGTGGTGATGGTGAAAAAGCACTGTTGGACATTATTCCTGATGTGAAGCATTCAGATCCT
GAAGTATCAACACAAGATGATGATATTAAGGATTCATTGATTAATTGGCTTGATGAGTTAAACCCTAAGCAAAAAGAAGT
TTTAGCGCGCCGTTTTGGTCTGCTTGGGTATGAACCATCAACACTTGAAGAAGTGGGACGCGAGATTAATCTAACACGTG
AGCGTGTGCGTCAGATTCAAGTAGAAGGTCTACGTCGTTTACGTGAAATCTTGATTAAACAAGGTTTGAGCATGGAAAAC
CTGTTCAGCGTCGAAGACGACTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (168-241)

• Sigma-70, region 4 (Sigma70_r4) (256-309)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (50-83)

• Sigma-70 region 2 (Sigma70_r2) (88-157)

3D structure

• AlphaFold DB: A0A1C7F621

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	82.934	100	0.847