Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   RJD38_RS04320 Genome accession   NZ_CP134271
Coordinates   976059..976577 (-) Length   172 a.a.
NCBI ID   WP_005593998.1    Uniprot ID   A3F9H8
Organism   Vibrio scophthalmi strain 20FBVib0200     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 971059..981577
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJD38_RS04290 (RJD38_04290) - 971599..972198 (-) 600 WP_065545950.1 LPP20 family lipoprotein -
  RJD38_RS04295 (RJD38_04295) - 972219..973199 (-) 981 WP_065545008.1 hypothetical protein -
  RJD38_RS04300 (RJD38_04300) - 973231..974193 (-) 963 WP_038219990.1 LPP20 family lipoprotein -
  RJD38_RS04305 (RJD38_04305) - 974775..975116 (-) 342 WP_367971402.1 hypothetical protein -
  RJD38_RS04315 (RJD38_04315) - 975490..975966 (+) 477 WP_005593999.1 RDD family protein -
  RJD38_RS04320 (RJD38_04320) luxS 976059..976577 (-) 519 WP_005593998.1 S-ribosylhomocysteine lyase Regulator
  RJD38_RS04325 (RJD38_04325) - 976595..977206 (-) 612 WP_005593997.1 hypothetical protein -
  RJD38_RS04330 (RJD38_04330) gshA 977223..978788 (-) 1566 WP_005593996.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18825.56 Da        Isoelectric Point: 4.7999

>NTDB_id=879547 RJD38_RS04320 WP_005593998.1 976059..976577(-) (luxS) [Vibrio scophthalmi strain 20FBVib0200]
MPLLDSFTVDHTRMHAPAVRVAKTMTTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDAVEIIDISP
MGCRTGFYMSLIGTPSEQQVATAWLAAMADVLTVESQNKIPELNEYQCGTAAMHSLEEAKQIAQAIIAAGISVNKNDDLA
LPAEMLNELRVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=879547 RJD38_RS04320 WP_005593998.1 976059..976577(-) (luxS) [Vibrio scophthalmi strain 20FBVib0200]
ATGCCACTACTAGATAGCTTTACTGTCGATCATACCCGCATGCATGCACCGGCTGTGCGTGTTGCGAAAACCATGACAAC
GCCAAAAGGCGACACCATTACTGTGTTTGATTTGCGTTTTACTGCGCCAAACAAAGACATCTTGTCAGAGAAGGGTATTC
ACACCTTAGAGCACCTATACGCCGGCTTTATGCGTAATCACCTTAATGGTGATGCGGTAGAAATTATTGATATTTCGCCA
ATGGGGTGTCGTACGGGTTTTTACATGAGCTTGATTGGTACGCCGAGTGAACAACAAGTTGCGACGGCATGGCTTGCTGC
AATGGCTGACGTGTTGACGGTTGAAAGTCAGAACAAAATCCCTGAGCTGAATGAATACCAGTGCGGTACTGCAGCGATGC
ACTCACTAGAAGAAGCGAAACAGATTGCGCAAGCAATTATCGCCGCGGGCATTTCAGTGAATAAGAATGACGATCTTGCT
CTACCGGCTGAAATGCTCAATGAGCTTCGCGTCGATTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3F9H8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

87.135

99.419

0.866