Detailed information NTG0087931

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: AABJ55_RS16345
• Genome accession: NZ_AP027612
• Coordinates: 3295768..3296793 (-)
• Length: 341 a.a.
• NCBI ID: WP_236929644.1
• Uniprot ID: -
• Organism: Escherichia coli strain LR-72
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 3290768..3301793

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AABJ55_RS16315 (VEE35_31240)	zapB	3290852..3291097 (+)	246	WP_001296623.1	septal ring assembly protein ZapB	-
AABJ55_RS16320 (VEE35_31250)	rraA	3291182..3291667 (-)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
AABJ55_RS16325 (VEE35_31260)	menA	3291760..3292686 (-)	927	WP_000139496.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
AABJ55_RS16330 (VEE35_31270)	hslU	3292753..3294084 (-)	1332	WP_001293341.1	HslU--HslV peptidase ATPase subunit	-
AABJ55_RS16335 (VEE35_31280)	hslV	3294094..3294624 (-)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
AABJ55_RS16340 (VEE35_31290)	ftsN	3294717..3295676 (-)	960	WP_000068828.1	cell division protein FtsN	-
AABJ55_RS16345 (VEE35_31300)	cytR	3295768..3296793 (-)	1026	WP_236929644.1	DNA-binding transcriptional regulator CytR	Regulator
AABJ55_RS16350 (VEE35_31310)	priA	3296949..3299147 (-)	2199	WP_001301269.1	primosomal protein N'	Machinery gene
AABJ55_RS16355 (VEE35_31320)	rpmE	3299350..3299562 (+)	213	WP_000710769.1	50S ribosomal protein L31	-
AABJ55_RS16360 (VEE35_31330)	yiiX	3299623..3300231 (-)	609	WP_000797353.1	YiiX family permuted papain-like enzyme	-
AABJ55_RS16365 (VEE35_31340)	metJ	3300415..3300732 (-)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37809.74 Da
• Isoelectric Point: 6.3842

>NTDB_id=87931 AABJ55_RS16345 WP_236929644.1 3295768..3296793(-) (cytR) [Escherichia coli strain LR-72]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LSTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=87931 AABJ55_RS16345 WP_236929644.1 3295768..3296793(-) (cytR) [Escherichia coli strain LR-72]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACCGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAGCTGGAG
CTGTCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	63.881	98.24	0.628
cytR	Vibrio cholerae C6706	65.138	95.894	0.625