Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   RHP47_RS11730 Genome accession   NZ_CP134200
Coordinates   2396037..2397428 (-) Length   463 a.a.
NCBI ID   WP_310840561.1    Uniprot ID   -
Organism   Thermosynechococcus sp. QKsg1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2391037..2402428
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHP47_RS11700 (RHP47_11700) - 2391530..2391934 (+) 405 WP_310840559.1 DUF3119 family protein -
  RHP47_RS11705 (RHP47_11705) - 2391924..2392892 (+) 969 WP_149821078.1 DUF3086 domain-containing protein -
  RHP47_RS11710 (RHP47_11710) plsY 2392903..2393538 (+) 636 WP_149821080.1 glycerol-3-phosphate 1-O-acyltransferase PlsY -
  RHP47_RS11715 (RHP47_11715) argF 2393680..2394594 (+) 915 WP_286649676.1 ornithine carbamoyltransferase -
  RHP47_RS11720 (RHP47_11720) - 2394599..2395450 (+) 852 WP_190278093.1 ABC transporter permease -
  RHP47_RS11725 (RHP47_11725) cobU 2395467..2396033 (+) 567 WP_149821086.1 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase -
  RHP47_RS11730 (RHP47_11730) radA 2396037..2397428 (-) 1392 WP_310840561.1 DNA repair protein RadA Machinery gene
  RHP47_RS11735 (RHP47_11735) - 2397447..2397935 (-) 489 WP_286649678.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  RHP47_RS11740 (RHP47_11740) - 2397929..2398249 (-) 321 WP_149821092.1 phasin family protein -
  RHP47_RS11745 (RHP47_11745) secG 2398359..2398592 (+) 234 WP_149821094.1 preprotein translocase subunit SecG -
  RHP47_RS11750 (RHP47_11750) - 2398604..2399101 (+) 498 WP_310840563.1 GNAT family N-acetyltransferase -
  RHP47_RS11755 (RHP47_11755) - 2399067..2400479 (-) 1413 WP_149821099.1 serine/threonine-protein kinase -
  RHP47_RS11760 (RHP47_11760) - 2400508..2401158 (-) 651 WP_149821101.1 hypothetical protein -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 49610.21 Da        Isoelectric Point: 7.0687

>NTDB_id=879248 RHP47_RS11730 WP_310840561.1 2396037..2397428(-) (radA) [Thermosynechococcus sp. QKsg1]
MPKAKVLYICRECGAESLQYFGRCPNCGQWNTLDEQVVTPVETAARRTTSRKSTAPHPLSAKALGEISEQTQSRSASGFA
ELDRVLGGGIVVGSLVLVAGEPGIGKSTLLWQMAATLGQQQRVLYVCAEESAQQVKLRSQRLGIAAPPSLYLLAETDLEV
ILQELTHLQPHLAIIDSIQAVYLPQLTAAPGSVSQVREGTAALMRLAKREQMSLFIVGHVTKEGAIAGPKVLEHLVDTVL
YFEGDRFASHRLVRAVKNRFGASQEIGVFEMGAQGLAEVTNPSALFLGDREPTPGTATIVACEGTRPLVVELQSLVSPTS
YPSPRRTATGIEYNRFLQILAVLEKRLGVPLSKLDAYVASAGGLNVAEPAADLGVAVAVVASFRDRWVQPQTVIIGEVGL
GGQVRAVSQLELRLREALKLGFRRAIIPESQACAIAGLEIYPVHRVTDAIVAALAPMTTEESP

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=879248 RHP47_RS11730 WP_310840561.1 2396037..2397428(-) (radA) [Thermosynechococcus sp. QKsg1]
ATGCCCAAGGCCAAGGTACTGTATATCTGCCGCGAGTGTGGTGCCGAGTCTCTGCAATACTTTGGTCGCTGTCCCAACTG
TGGTCAGTGGAATACCCTTGATGAGCAGGTGGTTACCCCTGTAGAGACCGCTGCTCGACGCACAACCTCCCGAAAATCGA
CCGCTCCCCACCCCCTCAGCGCCAAGGCCTTAGGAGAGATTAGCGAACAGACCCAGAGCCGTTCTGCCTCTGGATTTGCT
GAGTTGGATCGGGTTTTGGGAGGGGGGATTGTGGTTGGCTCCCTCGTGTTGGTGGCCGGCGAACCGGGAATTGGCAAGTC
CACGCTTTTGTGGCAGATGGCAGCCACCTTGGGGCAACAGCAGCGGGTGCTCTATGTCTGTGCAGAGGAATCGGCGCAGC
AGGTGAAATTGCGATCGCAACGCTTGGGCATTGCTGCCCCCCCTTCCCTTTATCTCTTGGCCGAGACGGATTTAGAGGTC
ATCCTGCAGGAACTTACCCATCTGCAACCCCATCTGGCGATTATTGATAGCATCCAAGCGGTGTATCTGCCCCAACTGAC
GGCTGCCCCCGGCTCGGTGTCTCAGGTCCGTGAGGGCACAGCCGCCTTGATGCGCTTAGCCAAGCGGGAGCAAATGAGTT
TATTTATTGTGGGGCATGTCACAAAGGAAGGGGCGATCGCCGGTCCGAAGGTGCTGGAACATTTGGTGGATACCGTGCTC
TACTTTGAGGGCGATCGCTTTGCCAGTCACCGCCTCGTACGCGCTGTCAAAAACCGCTTTGGTGCTAGTCAAGAAATTGG
CGTTTTTGAAATGGGCGCGCAGGGCTTAGCCGAGGTCACAAATCCTTCCGCGCTGTTTTTGGGCGATCGCGAGCCAACCC
CCGGTACCGCCACCATTGTGGCCTGTGAAGGCACCCGTCCGCTTGTGGTTGAGTTGCAAAGTTTGGTCAGCCCCACCAGT
TATCCCTCTCCGCGCCGCACGGCCACGGGCATTGAGTACAATCGCTTTTTGCAAATTCTCGCCGTCCTAGAAAAACGCCT
AGGGGTGCCCCTCTCGAAGCTAGATGCCTATGTGGCGTCCGCTGGCGGGCTGAATGTGGCGGAACCCGCTGCTGATCTCG
GGGTGGCGGTGGCTGTTGTAGCTAGTTTTCGCGATCGCTGGGTACAACCCCAAACCGTGATCATTGGCGAAGTGGGCTTA
GGGGGACAGGTGCGAGCGGTTTCCCAGTTAGAATTACGGCTGCGGGAGGCGCTGAAGTTGGGATTTCGCCGTGCCATTAT
TCCCGAAAGCCAAGCCTGTGCGATCGCGGGGCTAGAAATTTATCCTGTACATCGTGTCACCGATGCCATTGTGGCTGCCC
TTGCCCCCATGACCACTGAGGAATCCCCCTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(72-224)

Subunit ChlI of Mg-chelatase (ChlI)

(370-430)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.922

100

0.49
  radA Streptococcus mitis NCTC 12261

48.853

94.168

0.46
  radA Streptococcus pneumoniae Rx1

48.853

94.168

0.46
  radA Streptococcus pneumoniae D39

48.853

94.168

0.46
  radA Streptococcus pneumoniae R6

48.853

94.168

0.46
  radA Streptococcus pneumoniae TIGR4

48.853

94.168

0.46
  radA Streptococcus mitis SK321

48.853

94.168

0.46