Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   RI103_RS17345 Genome accession   NZ_CP134195
Coordinates   3779732..3781246 (+) Length   504 a.a.
NCBI ID   WP_310813138.1    Uniprot ID   -
Organism   Paraburkholderia sp. FT54     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3774732..3786246
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RI103_RS17320 (RI103_17320) kdsD 3775911..3776894 (+) 984 WP_310813133.1 arabinose 5-phosphate isomerase KdsD -
  RI103_RS17325 (RI103_17325) - 3776894..3777466 (+) 573 WP_310813134.1 HAD family hydrolase -
  RI103_RS17330 (RI103_17330) lptC 3777463..3778071 (+) 609 WP_310813135.1 LPS export ABC transporter periplasmic protein LptC -
  RI103_RS17335 (RI103_17335) lptA 3778092..3778763 (+) 672 WP_310813136.1 lipopolysaccharide transport periplasmic protein LptA -
  RI103_RS17340 (RI103_17340) lptB 3778760..3779545 (+) 786 WP_310813137.1 LPS export ABC transporter ATP-binding protein -
  RI103_RS17345 (RI103_17345) rpoN/rpoN1 3779732..3781246 (+) 1515 WP_310813138.1 RNA polymerase factor sigma-54 Machinery gene
  RI103_RS17350 (RI103_17350) hpf 3781417..3781773 (+) 357 WP_106282113.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  RI103_RS17355 (RI103_17355) - 3782063..3782578 (+) 516 WP_012431657.1 PTS sugar transporter subunit IIA -
  RI103_RS17360 (RI103_17360) hprK 3782706..3783674 (+) 969 WP_012431656.1 HPr(Ser) kinase/phosphatase -
  RI103_RS17365 (RI103_17365) rapZ 3783772..3784665 (+) 894 WP_310813139.1 RNase adapter RapZ -
  RI103_RS17370 (RI103_17370) - 3784705..3785337 (+) 633 WP_310813140.1 LON peptidase substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 55341.43 Da        Isoelectric Point: 5.0706

>NTDB_id=879234 RI103_RS17345 WP_310813138.1 3779732..3781246(+) (rpoN/rpoN1) [Paraburkholderia sp. FT54]
MKASLQLRLSQHLALTPQLQQSIRLLQLSTLELQQEVAMAISQNPLLENEDDWIASPLRVAADGSLIAQAPNSSAPSDQM
GGNTSSSSSSSERAENGEPQGVDEYNGLAGDSNGDASQWNLDDYGRSGNASDDDDLPPLQIHESSTSLRDHLMAQLRVTQ
AGQRDRALITFLIESLDDDGYLAATLEEVLADLPEELEVDLDEMNAALALLHSFDPAGVGARSASECLKLQLLRLDASPT
RTLALDIVAHHLELLAARDFTRLRKHLKANDDDLRDAHVLIRSLEPFPGAAYGKAEADYVVPDIMVRKTAQGWQAELNPE
VVPKLRINHLYANILRNNRGDPGSGSLRQQLQEARWLIKNIQQRFETILRVAQAIVERQKSFFVHGEIAMRPLVLREIAD
TLGLHESTVSRVTTGKYMLTPFGTLEFKYFFGSHVSTDTGGAASSTAIRALIKQLIGAENPKSPLSDSRIAELLAEQGFV
VARRTVAKYREALKIPAVNLRKSL

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=879234 RI103_RS17345 WP_310813138.1 3779732..3781246(+) (rpoN/rpoN1) [Paraburkholderia sp. FT54]
ATGAAAGCCAGCCTCCAACTCCGCCTATCGCAGCATCTTGCGCTGACGCCGCAACTGCAGCAGTCCATCCGGCTGCTTCA
GTTGTCTACGCTCGAATTGCAGCAGGAAGTCGCAATGGCGATCTCGCAGAATCCACTCCTCGAAAACGAGGACGACTGGA
TCGCGAGCCCGTTGCGCGTGGCGGCCGACGGCTCCCTGATCGCCCAGGCGCCCAACTCTTCCGCGCCCTCCGACCAGATG
GGCGGCAATACGTCGTCATCGTCCAGCAGCAGCGAGCGCGCCGAGAACGGCGAGCCGCAGGGCGTCGACGAATACAACGG
GCTGGCCGGCGACAGTAACGGCGACGCGTCGCAATGGAATCTCGACGACTACGGCCGCTCCGGCAACGCCTCCGACGACG
ACGATCTGCCGCCGCTGCAAATCCACGAATCGAGCACTTCGCTGCGCGACCACCTGATGGCGCAATTGCGCGTCACCCAG
GCGGGCCAGCGCGACCGTGCGCTGATCACCTTCCTGATCGAATCCCTCGACGACGACGGCTACCTGGCCGCCACGCTCGA
AGAAGTACTGGCCGATCTGCCCGAAGAACTCGAGGTCGACCTCGACGAAATGAATGCCGCGCTGGCGCTGCTGCATAGTT
TCGACCCGGCCGGGGTCGGCGCGCGCTCCGCGTCGGAATGCCTCAAGCTGCAATTGTTGCGGCTCGATGCCTCGCCCACG
CGCACACTCGCGTTGGACATCGTCGCCCACCATCTGGAACTGCTGGCGGCGCGCGATTTCACGCGCTTGCGCAAGCATCT
GAAGGCCAACGACGACGACCTGCGCGACGCGCATGTGCTCATCCGCTCGCTCGAACCGTTTCCCGGCGCCGCCTACGGCA
AGGCCGAAGCAGACTATGTCGTGCCGGACATCATGGTGCGCAAAACGGCACAGGGCTGGCAGGCCGAGCTGAACCCGGAA
GTGGTGCCCAAGCTGCGAATCAACCACCTTTACGCGAATATTCTGCGTAATAACCGGGGCGATCCGGGCAGCGGTTCGTT
GCGCCAGCAACTGCAGGAAGCGCGCTGGCTGATCAAAAATATCCAGCAACGTTTCGAGACCATCCTCCGTGTGGCGCAGG
CGATTGTCGAGCGTCAAAAGAGCTTTTTTGTGCACGGCGAAATTGCCATGCGCCCCTTGGTTTTGCGGGAAATTGCTGAT
ACGCTGGGCCTACACGAGTCAACTGTCTCGCGTGTGACAACCGGTAAATACATGCTGACCCCATTCGGGACGCTTGAATT
TAAGTACTTCTTCGGATCACACGTTTCGACTGACACGGGCGGCGCGGCGTCTTCAACGGCGATCCGCGCGCTCATCAAGC
AACTGATAGGAGCGGAAAACCCGAAATCTCCTCTTTCAGACAGTCGCATAGCCGAACTGCTGGCGGAACAGGGCTTCGTG
GTCGCACGGCGTACCGTTGCGAAGTATCGTGAAGCGCTCAAGATCCCGGCAGTGAACCTGCGCAAGTCTCTGTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(140-331)

Sigma-54, DNA binding domain (Sigma54_DBD)

(347-502)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

66.996

100

0.673