Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   RHK28_RS06880 Genome accession   NZ_CP134183
Coordinates   1365251..1366330 (-) Length   359 a.a.
NCBI ID   WP_226971900.1    Uniprot ID   -
Organism   Thermosynechococcus sp. HY593     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1360251..1371330
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHK28_RS06865 (RHK28_06865) - 1361565..1363727 (-) 2163 WP_302679188.1 AMIN domain-containing protein -
  RHK28_RS06870 (RHK28_06870) - 1363822..1364541 (-) 720 WP_149819373.1 type 4a pilus biogenesis protein PilO -
  RHK28_RS06875 (RHK28_06875) - 1364538..1365239 (-) 702 WP_149819375.1 PilN domain-containing protein -
  RHK28_RS06880 (RHK28_06880) pilM 1365251..1366330 (-) 1080 WP_226971900.1 type IV pilus biogenesis protein PilM Machinery gene
  RHK28_RS06885 (RHK28_06885) - 1366594..1367175 (-) 582 WP_302679189.1 L,D-transpeptidase -
  RHK28_RS06890 (RHK28_06890) - 1367205..1367636 (-) 432 WP_149819381.1 hypothetical protein -
  RHK28_RS06895 (RHK28_06895) - 1367806..1369035 (-) 1230 WP_302679190.1 acetate/propionate family kinase -
  RHK28_RS06900 (RHK28_06900) comA 1369158..1370855 (+) 1698 WP_149819386.1 phospholipase D-like domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 359 a.a.        Molecular weight: 39259.30 Da        Isoelectric Point: 4.2866

>NTDB_id=879216 RHK28_RS06880 WP_226971900.1 1365251..1366330(-) (pilM) [Thermosynechococcus sp. HY593]
MLGNLFAKPKQGLGIELTPERVNIVQLQRQKQGLKMTAMASVPLSEGAIEEGRIIDTTAVADAIRQGIEDKRIKQKEVIS
AIPMNEAVIRLIRLPAELPDYELREVVLMQEAPLYLPFPREEADVDYQKLGTSLDEDGIERVEILLVGTPREVTDAYINA
FTQAGLQLIALEVTNFALMRTLRDSLQQFVGEAAAIIDIGDEGTEISIVKDGIPQFNRKVPIGKERMQEAISRAMNLPPS
MGVDLIENLTVPLEPMDVTGALNPSGAAILRVLSDLADEIRRSIDFYLNQGESLEVSQLLLAGPGASIGQVDEFFSQRLN
YATTLVDPISLLGLQTLEEIPLEKRPALGTVIGLGLRGA

Nucleotide


Download         Length: 1080 bp        

>NTDB_id=879216 RHK28_RS06880 WP_226971900.1 1365251..1366330(-) (pilM) [Thermosynechococcus sp. HY593]
GTGCTGGGAAATCTATTTGCAAAACCAAAGCAGGGCTTGGGGATTGAACTCACCCCAGAGCGGGTCAATATCGTACAGCT
TCAGCGGCAAAAGCAGGGTCTGAAAATGACCGCTATGGCCTCAGTGCCCTTGAGTGAAGGCGCCATTGAAGAAGGCCGCA
TCATTGACACCACCGCCGTCGCCGATGCCATCCGTCAAGGGATTGAGGATAAGCGCATCAAACAAAAAGAGGTGATCAGT
GCCATTCCCATGAATGAAGCCGTGATTCGCCTGATTCGCCTGCCTGCGGAATTACCCGACTATGAATTGCGGGAAGTGGT
TCTCATGCAGGAAGCGCCCCTCTACCTGCCCTTTCCCCGTGAAGAGGCCGATGTTGACTATCAAAAACTGGGAACCTCCC
TTGATGAAGATGGCATTGAGCGGGTAGAAATTTTGCTCGTGGGCACGCCCCGCGAAGTGACCGATGCCTACATCAATGCC
TTTACCCAAGCCGGTTTACAACTCATCGCCCTTGAAGTGACCAATTTTGCCCTCATGCGTACCCTGCGGGATTCACTACA
GCAGTTTGTGGGCGAAGCAGCAGCGATTATTGATATAGGCGACGAGGGCACAGAAATTAGCATCGTCAAAGATGGCATTC
CCCAGTTCAACCGCAAAGTGCCCATTGGTAAAGAACGGATGCAAGAAGCCATTAGCCGCGCCATGAACTTGCCGCCTTCG
ATGGGCGTTGACCTGATTGAGAATCTGACCGTTCCCCTAGAGCCGATGGATGTGACCGGAGCACTCAACCCCAGTGGTGC
CGCTATTTTGCGAGTGCTCTCCGATCTAGCAGACGAAATCCGCCGCTCCATTGACTTTTACCTCAACCAAGGGGAAAGTC
TAGAGGTCTCGCAGTTGCTGCTTGCCGGTCCCGGTGCCAGTATTGGTCAAGTGGATGAGTTTTTTAGTCAGCGGCTCAAC
TATGCCACCACTTTGGTTGACCCCATTAGTTTGCTGGGACTGCAAACCCTAGAAGAGATTCCCCTCGAAAAACGCCCTGC
CCTCGGCACGGTGATTGGTCTTGGTCTGCGTGGCGCTTAG

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-358)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Synechocystis sp. PCC 6803

49.862

100

0.504