Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   RHJ80_RS10880 Genome accession   NZ_CP134181
Coordinates   2213751..2215448 (+) Length   565 a.a.
NCBI ID   WP_310800979.1    Uniprot ID   -
Organism   Thermosynechococcus sp. QS41     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2208751..2220448
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHJ80_RS10855 (RHJ80_10855) - 2209120..2209821 (-) 702 WP_310800976.1 PilN domain-containing protein -
  RHJ80_RS10860 (RHJ80_10860) pilM 2209833..2210912 (-) 1080 WP_225901572.1 type IV pilus biogenesis protein PilM Machinery gene
  RHJ80_RS10865 (RHJ80_10865) - 2211186..2211767 (-) 582 WP_310800977.1 L,D-transpeptidase -
  RHJ80_RS10870 (RHJ80_10870) - 2211797..2212228 (-) 432 WP_310800978.1 hypothetical protein -
  RHJ80_RS10875 (RHJ80_10875) - 2212399..2213628 (-) 1230 WP_310744549.1 acetate kinase -
  RHJ80_RS10880 (RHJ80_10880) comA 2213751..2215448 (+) 1698 WP_310800979.1 phospholipase D-like domain-containing protein Machinery gene
  RHJ80_RS10885 (RHJ80_10885) - 2215476..2215988 (-) 513 WP_310800980.1 adenine phosphoribosyltransferase -
  RHJ80_RS10890 (RHJ80_10890) - 2216038..2217342 (-) 1305 WP_310800981.1 NCS2 family permease -
  RHJ80_RS10895 (RHJ80_10895) - 2217738..2219447 (+) 1710 WP_310800982.1 hypothetical protein -
  RHJ80_RS10900 (RHJ80_10900) - 2219465..2220256 (+) 792 WP_206200185.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -

Sequence

Protein


Download         Length: 565 a.a.        Molecular weight: 63207.93 Da        Isoelectric Point: 9.0503

>NTDB_id=879187 RHJ80_RS10880 WP_310800979.1 2213751..2215448(+) (comA) [Thermosynechococcus sp. QS41]
MFWQKLKWRRHGVYLLLFLLGLLIAAVVLTQLRSHPILRPALDPLPQHPQIAVHMNHSQAHSYQEPYRPYTREGEDLEAI
MIEQIAKAQKTIDVAVQEFRLPNLAKALVARQQAGVRVRVVMENTYTAPWATYSPAQVSAMDPRMRERYNDWKALVDTNG
DGQLSAAELSDRDVQTILNEAKIPWIDDTADGSKGSMLMHHKFIVIDNRQVIATTANFTLSDVHGDLGRPDTRGNANSLL
VIDSPAVARLFTEEFNIMWGDGPGGQPNSRFGVKKPVRPPQRVVVGDAMVTVRFSPTPRSQPWAASTNGLIGQTLNRSRQ
KIDMALFVFSDQELSYVLEERHNQGVKIRALIDSGFIYRDFSEALDMMGVAMANTAQARQGNCYYEAGNRPWQKPIQTVG
TPLLPEGDKLHHKYGVVDDRTVIVGSHNWSEAANRGNDEFLLVIEHPTVAAHYEREFERLYSNSRLGLPQHIRDRIQQQL
TACGGKIATRPAPSSGNRASTPTTRVNLNTATAEELQTLPGVGPKLAAEIIRAREQKPFQSLADLDAVPGVGPKLLERLR
DRVTW

Nucleotide


Download         Length: 1698 bp        

>NTDB_id=879187 RHJ80_RS10880 WP_310800979.1 2213751..2215448(+) (comA) [Thermosynechococcus sp. QS41]
GTGTTTTGGCAAAAGCTTAAATGGCGGCGACACGGTGTGTATCTGCTGTTGTTTCTATTGGGGCTGTTGATTGCGGCTGT
GGTGCTCACTCAATTGCGATCGCACCCAATTCTCCGCCCTGCCCTAGACCCGCTGCCTCAACATCCGCAAATCGCGGTAC
ACATGAATCACTCCCAAGCCCACAGTTATCAAGAACCCTATCGCCCCTATACCCGTGAAGGGGAAGACCTTGAGGCAATC
ATGATTGAGCAGATTGCCAAGGCACAAAAGACGATTGATGTGGCGGTGCAGGAGTTTCGCCTACCCAATCTGGCCAAGGC
CCTAGTAGCACGGCAGCAGGCGGGAGTGCGGGTACGAGTGGTGATGGAAAATACCTACACTGCGCCTTGGGCAACCTACA
GCCCTGCGCAAGTGAGCGCCATGGATCCGAGAATGCGGGAGCGCTACAACGACTGGAAAGCCCTCGTGGATACCAATGGC
GATGGCCAACTCAGTGCAGCGGAACTCAGCGATCGCGATGTGCAGACGATTCTCAACGAGGCCAAGATTCCTTGGATTGA
TGACACTGCCGATGGCTCTAAAGGCAGTATGCTCATGCACCACAAGTTTATCGTTATTGATAATCGCCAAGTCATTGCCA
CTACTGCCAACTTTACCCTCAGTGATGTCCATGGCGACTTGGGACGACCCGATACCCGTGGCAATGCCAACTCCCTCTTG
GTGATTGATAGCCCCGCCGTGGCACGCCTATTTACTGAGGAATTCAACATTATGTGGGGGGATGGTCCCGGTGGTCAGCC
CAACAGTCGCTTTGGGGTCAAAAAGCCAGTGCGTCCCCCTCAACGGGTGGTGGTGGGCGATGCCATGGTCACGGTGCGCT
TTTCACCAACCCCGCGATCGCAACCCTGGGCGGCCTCTACCAACGGCCTCATTGGTCAAACTCTGAATCGCAGTCGCCAA
AAAATTGATATGGCGCTCTTTGTTTTCTCCGATCAGGAGTTGTCCTACGTGCTTGAGGAACGCCACAACCAAGGGGTGAA
GATTCGCGCCCTCATTGACTCAGGATTTATCTACCGTGACTTTAGCGAAGCCCTCGATATGATGGGGGTGGCGATGGCCA
ATACTGCCCAAGCCCGTCAAGGCAACTGTTACTACGAAGCCGGCAACCGCCCGTGGCAAAAGCCCATTCAAACGGTGGGC
ACCCCCCTCCTACCAGAGGGCGATAAGCTGCACCACAAGTATGGCGTGGTTGACGATCGCACGGTGATTGTGGGTTCCCA
CAACTGGTCCGAGGCGGCCAACCGCGGCAATGATGAATTCTTGCTGGTCATCGAGCATCCTACGGTTGCAGCTCACTACG
AACGGGAGTTTGAGCGCCTCTATAGCAATAGTCGTTTGGGTCTGCCGCAGCATATTCGCGATCGCATTCAGCAGCAGTTG
ACCGCCTGTGGTGGTAAGATTGCCACCCGACCTGCCCCCTCTTCAGGAAATCGTGCCAGCACGCCGACTACACGGGTGAA
CTTGAACACGGCCACCGCAGAGGAACTGCAAACCCTACCGGGCGTCGGCCCCAAACTGGCGGCTGAAATTATCCGTGCTC
GCGAGCAAAAGCCCTTTCAATCCTTGGCCGATCTAGATGCTGTCCCCGGTGTCGGGCCGAAGCTCCTCGAACGCTTGCGC
GATCGCGTGACGTGGTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(504-564)

PLD-like domain (PLDc_2)

(313-460)

PLD-like domain (PLDc_2)

(81-259)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Synechocystis sp. PCC 6803

49.47

100

0.496