Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   RHJ80_RS01690 Genome accession   NZ_CP134181
Coordinates   363383..364774 (+) Length   463 a.a.
NCBI ID   WP_310801339.1    Uniprot ID   -
Organism   Thermosynechococcus sp. QS41     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 358383..369774
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHJ80_RS01660 (RHJ80_01660) - 359653..360303 (+) 651 WP_310744732.1 phosphorylase -
  RHJ80_RS01665 (RHJ80_01665) - 360332..361744 (+) 1413 WP_310801337.1 serine/threonine-protein kinase -
  RHJ80_RS01670 (RHJ80_01670) - 361710..362207 (-) 498 WP_310801338.1 GNAT family N-acetyltransferase -
  RHJ80_RS01675 (RHJ80_01675) secG 362219..362452 (-) 234 WP_149821094.1 preprotein translocase subunit SecG -
  RHJ80_RS01680 (RHJ80_01680) - 362562..362882 (+) 321 WP_149821092.1 phasin family protein -
  RHJ80_RS01685 (RHJ80_01685) - 362876..363364 (+) 489 WP_149821090.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  RHJ80_RS01690 (RHJ80_01690) radA 363383..364774 (+) 1392 WP_310801339.1 DNA repair protein RadA Machinery gene
  RHJ80_RS01695 (RHJ80_01695) cobU 364778..365344 (-) 567 WP_310801340.1 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase -
  RHJ80_RS01700 (RHJ80_01700) - 365361..366191 (-) 831 WP_302678686.1 ABC transporter permease -
  RHJ80_RS01705 (RHJ80_01705) argF 366199..367113 (-) 915 WP_302678687.1 ornithine carbamoyltransferase -
  RHJ80_RS01710 (RHJ80_01710) plsY 367255..367890 (-) 636 WP_310801341.1 glycerol-3-phosphate 1-O-acyltransferase PlsY -
  RHJ80_RS01715 (RHJ80_01715) - 367901..368869 (-) 969 WP_206200799.1 DUF3086 domain-containing protein -
  RHJ80_RS01720 (RHJ80_01720) - 368859..369263 (-) 405 WP_206200800.1 DUF3119 family protein -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 49578.17 Da        Isoelectric Point: 7.3470

>NTDB_id=879177 RHJ80_RS01690 WP_310801339.1 363383..364774(+) (radA) [Thermosynechococcus sp. QS41]
MPKAKVLYICRECGAESVQYFGRCPNCGQWNTLDEQVVSPVETAARPTTPRKSTTPHPRSAKALGEISEQTQSRSASGFA
ELDRVLGGGIVVGSLVLVAGEPGIGKSTLLLQMAATLGQQQRVLYVCAEESAQQVKLRSQRLGIAASPSLYLLAETDLEV
ILQELTHLQPHLAIIDSIQAVYLPQLTAAPGSVSQVREGTAALMRLAKREQMSLFIVGHVTKEGAIAGPKVLEHLVDTVL
YFEGDRFASHRLVRAVKNRFGASQEIGVFEMGAQGLAEVTNPSALFLGDREPTPGTATIVACEGTRPLVVELQSLVSPTS
YPSPRRTATGIEYNRFLQILAVLEKRLGVPLSKLDAYVASAGGLNVAEPAADLGVAVAVVASFRDRWVHPQTVIIGEVGL
GGQVRAVSQLELRLREALKLGFRRAIIPENQACAIAGLEIYPVRRVTDAIVAALAPMTTEESP

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=879177 RHJ80_RS01690 WP_310801339.1 363383..364774(+) (radA) [Thermosynechococcus sp. QS41]
ATGCCCAAGGCCAAGGTACTGTATATCTGCCGCGAGTGTGGTGCCGAGTCTGTGCAATACTTTGGTCGCTGTCCCAACTG
TGGTCAGTGGAATACCCTTGATGAGCAGGTGGTTAGCCCTGTAGAGACCGCTGCTCGACCCACAACCCCCCGAAAATCGA
CCACTCCCCACCCCCGCAGTGCCAAGGCCCTAGGAGAGATTAGCGAACAGACACAGAGCCGTTCTGCCTCTGGATTTGCC
GAGTTGGATCGGGTTTTGGGAGGGGGGATTGTGGTTGGCTCCCTCGTGTTGGTGGCCGGCGAACCGGGAATTGGCAAGTC
CACGCTTTTGTTGCAGATGGCAGCCACCTTAGGGCAACAGCAGCGGGTGCTCTATGTCTGTGCTGAGGAATCGGCGCAGC
AGGTGAAATTGCGATCGCAACGACTGGGCATTGCCGCCTCCCCTTCCCTTTATCTCTTGGCCGAGACGGATTTAGAGGTC
ATCCTGCAGGAGCTGACCCATCTGCAACCCCATCTGGCGATTATTGATAGCATCCAAGCGGTGTATCTGCCCCAATTGAC
GGCTGCCCCCGGCTCGGTCTCTCAGGTTCGTGAGGGCACAGCCGCCTTGATGCGCTTAGCCAAGCGGGAGCAGATGAGTC
TCTTTATTGTGGGGCATGTTACAAAGGAGGGGGCGATCGCCGGTCCGAAGGTGCTGGAACATTTGGTGGATACCGTGCTC
TACTTTGAGGGCGATCGCTTTGCCAGTCACCGCCTCGTACGCGCTGTCAAAAACCGCTTTGGGGCTAGTCAAGAAATTGG
CGTTTTTGAAATGGGCGCGCAGGGCTTAGCCGAGGTCACAAATCCTTCGGCGCTGTTTTTGGGCGATCGCGAGCCAACCC
CCGGTACCGCCACCATTGTGGCCTGTGAAGGCACCCGTCCGCTTGTGGTTGAGTTGCAAAGTTTAGTTAGCCCCACCAGT
TATCCCTCTCCACGCCGCACGGCCACGGGCATTGAGTACAATCGCTTTTTGCAAATTCTCGCCGTCCTAGAAAAACGCCT
AGGGGTGCCCCTCTCGAAGCTAGATGCCTATGTGGCGTCCGCTGGCGGGCTGAATGTGGCGGAACCCGCTGCTGATCTGG
GGGTGGCAGTGGCTGTTGTAGCTAGTTTTCGCGATCGCTGGGTGCACCCCCAAACGGTGATCATTGGCGAAGTGGGCTTA
GGGGGACAGGTGCGAGCGGTTTCCCAGTTAGAATTACGGCTGCGGGAGGCGCTGAAGTTGGGATTTCGCCGTGCCATTAT
TCCCGAAAACCAAGCCTGTGCGATCGCAGGGCTAGAGATTTATCCTGTACGTCGTGTCACCGATGCCATTGTGGCTGCCC
TTGCCCCCATGACCACTGAGGAATCCCCCTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(370-430)

AAA domain (AAA_25)

(72-224)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.348

99.352

0.49
  radA Streptococcus pneumoniae Rx1

49.541

94.168

0.467
  radA Streptococcus pneumoniae D39

49.541

94.168

0.467
  radA Streptococcus pneumoniae R6

49.541

94.168

0.467
  radA Streptococcus pneumoniae TIGR4

49.541

94.168

0.467
  radA Streptococcus mitis NCTC 12261

49.541

94.168

0.467
  radA Streptococcus mitis SK321

49.541

94.168

0.467