Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   RHJ31_RS04940 Genome accession   NZ_CP134180
Coordinates   1038287..1039984 (-) Length   565 a.a.
NCBI ID   WP_302677575.1    Uniprot ID   -
Organism   Thermosynechococcus sp. JY1331     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1033287..1044984
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHJ31_RS04920 (RHJ31_04920) - 1033489..1034280 (-) 792 WP_302677572.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  RHJ31_RS04925 (RHJ31_04925) - 1034298..1036019 (-) 1722 WP_302677573.1 hypothetical protein -
  RHJ31_RS04930 (RHJ31_04930) - 1036402..1037706 (+) 1305 WP_302677574.1 NCS2 family permease -
  RHJ31_RS04935 (RHJ31_04935) - 1037756..1038268 (+) 513 WP_149819388.1 adenine phosphoribosyltransferase -
  RHJ31_RS04940 (RHJ31_04940) comA 1038287..1039984 (-) 1698 WP_302677575.1 phospholipase D-like domain-containing protein Machinery gene
  RHJ31_RS04945 (RHJ31_04945) - 1040107..1041336 (+) 1230 WP_149819384.1 acetate/propionate family kinase -
  RHJ31_RS04950 (RHJ31_04950) - 1041506..1041937 (+) 432 WP_286649438.1 hypothetical protein -
  RHJ31_RS04955 (RHJ31_04955) - 1041967..1042548 (+) 582 WP_302677576.1 L,D-transpeptidase -
  RHJ31_RS04960 (RHJ31_04960) pilM 1042812..1043891 (+) 1080 WP_315862964.1 type IV pilus assembly protein PilM Machinery gene
  RHJ31_RS04965 (RHJ31_04965) - 1043903..1044604 (+) 702 WP_302677577.1 PilN domain-containing protein -

Sequence

Protein


Download         Length: 565 a.a.        Molecular weight: 63125.74 Da        Isoelectric Point: 8.0435

>NTDB_id=879163 RHJ31_RS04940 WP_302677575.1 1038287..1039984(-) (comA) [Thermosynechococcus sp. JY1331]
MFWQKLKWRRHGVYLLLFLLGLLIAAVVLTQLRSHPILRPALDPLPQHPQIAVHMNHSQAHSYQEPYRPYTREGEDLEAI
MIEQIAKAQKTIDVAVQEFRLPNLAKALVARQQAGVRVRVVMENTYTAPWATYSAGQVSAMDPRMRERYNDWKALVDTNG
DGQLSAAELSDRDVQTILNEAKIPWIDDTADGSKGSMLMHHKFIVIDNRQVIATTANFTLSDVHGDLGRPDTRGNANSLL
VIDSPAVARLFTEEFNIMWGDGPGGQPNSRFGVKKPVRPPQPVAVGDAMVTVRFSPTPRSQPWSVSTNGLIGQTLRWARQ
KIDMALFVFSDQELSYVLEERHNQGVSIRALIDSGFIYRDFSEALDMMGVAMANTAQARQGNCYYEAGNRPWQNPIQTVG
TPLLPEGDKLHHKYGVVDDRTVIVGSHNWSEAANRGNDEFLLVIEHPTVAAHYEREFERLYSNSRLGLPQHIRDRIQQQL
TACGGKIATRPAPSSGNRASTPTTRVNLNTATAEELQTLPGVGPKLAAEIIRAREQKPFQSLADLDAVPGVGPKLLERLR
DRVTW

Nucleotide


Download         Length: 1698 bp        

>NTDB_id=879163 RHJ31_RS04940 WP_302677575.1 1038287..1039984(-) (comA) [Thermosynechococcus sp. JY1331]
GTGTTTTGGCAAAAGCTTAAATGGCGGCGACACGGTGTGTATCTGCTGTTGTTTCTATTGGGGCTGTTGATTGCGGCTGT
GGTGCTCACTCAATTGCGATCGCACCCGATTCTCCGCCCTGCCCTAGACCCGCTGCCTCAACATCCACAAATCGCGGTAC
ACATGAATCACTCCCAAGCCCACAGTTATCAAGAACCCTATCGCCCCTATACCCGTGAAGGGGAAGACCTTGAGGCAATC
ATGATTGAGCAGATTGCCAAGGCACAAAAGACGATTGATGTGGCGGTGCAGGAGTTTCGCTTACCCAATCTGGCCAAGGC
CCTAGTAGCACGGCAGCAGGCGGGGGTGCGGGTACGAGTGGTGATGGAAAATACCTACACTGCGCCTTGGGCAACATACA
GTGCTGGGCAGGTGAGTGCCATGGATCCAAGAATGCGGGAGCGCTATAACGACTGGAAAGCGCTGGTGGATACCAACGGC
GATGGCCAACTCAGTGCTGCCGAACTCAGCGATCGCGATGTGCAGACGATTCTCAACGAAGCGAAGATTCCTTGGATTGA
TGACACTGCCGATGGCTCCAAAGGCAGTATGCTCATGCACCACAAGTTTATTGTGATTGACAATCGCCAAGTGATTGCGA
CTACGGCGAACTTTACCCTCAGTGATGTCCACGGCGACTTGGGACGACCCGATACCCGTGGCAATGCCAACTCCCTCTTG
GTGATTGATAGTCCCGCCGTGGCACGCCTATTTACTGAGGAATTCAACATCATGTGGGGGGATGGTCCCGGTGGTCAGCC
CAACAGTCGCTTTGGGGTCAAAAAGCCAGTGCGTCCCCCTCAACCAGTAGCGGTGGGCGATGCCATGGTTACGGTGCGCT
TTTCGCCAACCCCGCGATCGCAACCTTGGTCTGTCTCCACCAATGGCTTGATTGGCCAAACACTACGTTGGGCACGCCAA
AAAATTGACATGGCGCTTTTTGTCTTTTCAGATCAAGAACTATCCTACGTTTTAGAGGAACGCCATAACCAAGGGGTTAG
CATTCGCGCCCTCATTGACTCAGGATTTATCTACCGTGACTTTAGCGAAGCCCTCGATATGATGGGGGTGGCGATGGCCA
ATACTGCCCAAGCCCGTCAAGGCAACTGTTACTACGAAGCCGGCAACCGCCCGTGGCAAAACCCCATTCAAACGGTGGGC
ACCCCCCTCCTACCAGAGGGCGATAAGCTGCACCACAAGTATGGCGTGGTCGACGATCGCACCGTCATTGTTGGTTCCCA
CAACTGGTCCGAGGCGGCCAACCGCGGCAATGATGAATTCTTGCTGGTCATCGAGCATCCTACGGTTGCAGCTCACTACG
AACGGGAGTTTGAGCGGCTCTATAGCAATAGTCGTTTGGGTCTGCCGCAGCATATTCGCGATCGCATTCAGCAGCAGTTG
ACCGCCTGTGGCGGTAAGATTGCCACCCGACCTGCCCCCTCTTCAGGAAATCGTGCCAGCACACCGACTACACGGGTGAA
CTTGAACACGGCCACCGCAGAGGAACTGCAAACCCTACCGGGCGTCGGCCCAAAACTAGCGGCTGAAATTATCCGTGCCC
GCGAGCAAAAGCCCTTTCAATCCTTGGCCGATCTAGATGCCGTCCCCGGTGTCGGGCCGAAGCTCCTCGAACGCTTGCGC
GATCGCGTGACGTGGTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(504-564)

PLD-like domain (PLDc_2)

(81-259)

PLD-like domain (PLDc_2)

(313-460)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Synechocystis sp. PCC 6803

49.293

100

0.494