Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   RHI63_RS10950 Genome accession   NZ_CP134175
Coordinates   2231371..2233068 (+) Length   565 a.a.
NCBI ID   WP_310821591.1    Uniprot ID   -
Organism   Thermosynechococcus sp. GLH187     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2226371..2238068
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHI63_RS10925 (RHI63_10925) - 2226740..2227441 (-) 702 WP_206200176.1 PilN domain-containing protein -
  RHI63_RS10930 (RHI63_10930) pilM 2227453..2228532 (-) 1080 WP_225901572.1 type IV pilus biogenesis protein PilM Machinery gene
  RHI63_RS10935 (RHI63_10935) - 2228806..2229387 (-) 582 WP_310821589.1 L,D-transpeptidase -
  RHI63_RS10940 (RHI63_10940) - 2229417..2229848 (-) 432 WP_206200179.1 hypothetical protein -
  RHI63_RS10945 (RHI63_10945) - 2230019..2231248 (-) 1230 WP_310821590.1 acetate kinase -
  RHI63_RS10950 (RHI63_10950) comA 2231371..2233068 (+) 1698 WP_310821591.1 phospholipase D-like domain-containing protein Machinery gene
  RHI63_RS10955 (RHI63_10955) - 2233096..2233608 (-) 513 WP_206200182.1 adenine phosphoribosyltransferase -
  RHI63_RS10960 (RHI63_10960) - 2233658..2234962 (-) 1305 WP_206200183.1 NCS2 family permease -
  RHI63_RS10965 (RHI63_10965) - 2235357..2237078 (+) 1722 WP_310743052.1 hypothetical protein -
  RHI63_RS10970 (RHI63_10970) - 2237096..2237887 (+) 792 WP_310743053.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -

Sequence

Protein


Download         Length: 565 a.a.        Molecular weight: 63135.87 Da        Isoelectric Point: 9.2575

>NTDB_id=879091 RHI63_RS10950 WP_310821591.1 2231371..2233068(+) (comA) [Thermosynechococcus sp. GLH187]
MFWQKLKWRRHGVYLLLFLLGLLIAAVVLTQLRSHPILRPALDPLPQHPQIAVHMNHSQAHSYQEPYRPYTREGEDLEAI
MIEQIAKAQKTIDVAVQEFRLPNLAKALVARQQAGVRVRVVMENTYTAPWATYSPAQVSAMDPRMRERYNAWKALVDTNG
DGQLSAAELSDRDVQTILNEAKIPWIDDTADGSKGSMLMHHKFIVIDNRQVIATTANFTLSDVHGDLGRPDTRGNANSLL
VIDSPAVARLFTEEFNIMWGDGPGGQPNSRFGVKKPVRPPQRVAVGDAMVTVRFSPTPRSQPWAASTNGLIGQTLNRSRQ
KIDMALFVFSDQELSYVLEERHNQGVKIRALIDSGFIYRDFSEALDMMGVAMANTAQARQGNCYYEAGNRPWQKPIQTVG
TPLLPEGDKLHHKYGVVDDRTVIVGSHNWSEAANRGNDEFLLVIEHPTVAAHYEREFERLYSNSRLGLPQHIRDRIQQQL
TACGGKIATRPAPSSGNRASTPTTRVNLNTATAEELQTLPGVGPKLAAEIIRAREQKPFQSLADLDAVPGVGPKLLERLR
DRVTW

Nucleotide


Download         Length: 1698 bp        

>NTDB_id=879091 RHI63_RS10950 WP_310821591.1 2231371..2233068(+) (comA) [Thermosynechococcus sp. GLH187]
GTGTTTTGGCAAAAGCTTAAATGGCGGCGACACGGTGTGTATCTGCTGTTGTTTCTATTGGGGCTGTTGATTGCGGCTGT
GGTGCTCACTCAATTGCGATCGCACCCAATTCTCCGCCCTGCCCTAGACCCGCTGCCTCAACATCCGCAAATCGCGGTAC
ACATGAATCACTCCCAAGCCCACAGTTATCAAGAACCCTATCGCCCCTATACCCGTGAAGGGGAAGACCTTGAGGCAATC
ATGATTGAGCAGATTGCCAAGGCACAAAAGACGATTGATGTGGCGGTGCAGGAGTTTCGCCTACCCAATCTGGCCAAGGC
CCTAGTAGCACGGCAGCAGGCGGGAGTGCGGGTACGAGTGGTGATGGAAAATACCTACACTGCGCCTTGGGCAACCTACA
GCCCTGCGCAAGTGAGCGCCATGGATCCGAGAATGCGGGAGCGCTACAACGCCTGGAAAGCCCTCGTGGATACCAATGGC
GATGGCCAACTCAGTGCAGCGGAACTCAGCGATCGCGATGTGCAGACGATTCTCAACGAGGCCAAGATTCCTTGGATTGA
TGACACTGCCGATGGCTCTAAAGGCAGTATGCTCATGCACCACAAGTTTATCGTTATTGATAATCGCCAAGTCATTGCCA
CTACTGCCAACTTTACCCTCAGTGATGTCCATGGCGACTTGGGACGACCCGATACCCGTGGCAATGCCAACTCCCTCTTG
GTGATTGATAGCCCCGCCGTGGCACGCCTATTTACTGAGGAATTCAACATTATGTGGGGGGATGGTCCCGGTGGTCAGCC
CAACAGTCGCTTTGGGGTCAAAAAGCCAGTGCGTCCCCCTCAACGGGTGGCTGTGGGCGATGCCATGGTCACGGTGCGCT
TTTCGCCAACCCCGCGATCGCAACCCTGGGCGGCCTCTACCAACGGCCTCATTGGTCAAACTCTGAATCGCAGTCGCCAA
AAAATTGATATGGCGCTCTTTGTTTTCTCCGATCAGGAGTTGTCCTACGTGCTTGAGGAACGCCACAACCAAGGGGTGAA
GATTCGCGCCCTCATTGACTCAGGATTTATCTACCGTGACTTTAGCGAAGCCCTCGATATGATGGGGGTAGCGATGGCCA
ATACTGCCCAAGCCCGTCAAGGCAACTGTTACTACGAAGCCGGCAACCGCCCATGGCAAAAGCCCATTCAAACGGTGGGC
ACCCCCCTCCTACCAGAGGGCGATAAGCTGCACCACAAGTATGGCGTGGTTGACGATCGCACGGTGATTGTGGGTTCCCA
CAACTGGTCCGAGGCGGCCAACCGCGGCAATGATGAATTCTTGCTGGTCATCGAGCATCCTACGGTTGCAGCTCACTACG
AACGGGAGTTTGAGCGCCTCTATAGCAATAGTCGTTTGGGTCTGCCGCAGCATATTCGCGATCGCATTCAGCAGCAGTTG
ACCGCCTGTGGTGGTAAGATTGCCACCCGACCTGCCCCCTCTTCAGGAAATCGTGCCAGCACGCCGACTACACGGGTGAA
CTTGAACACGGCCACCGCAGAGGAACTGCAAACCCTACCGGGCGTCGGCCCCAAACTGGCGGCTGAAATTATCCGTGCTC
GCGAGCAAAAGCCCTTTCAATCCTTGGCCGATCTAGATGCTGTCCCCGGTGTCGGGCCGAAGCTCCTCGAACGCTTGCGC
GATCGCGTGACGTGGTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(504-564)

PLD-like domain (PLDc_2)

(313-460)

PLD-like domain (PLDc_2)

(81-259)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Synechocystis sp. PCC 6803

49.47

100

0.496