Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   RHI18_RS10850 Genome accession   NZ_CP134174
Coordinates   2211345..2213042 (+) Length   565 a.a.
NCBI ID   WP_310743051.1    Uniprot ID   -
Organism   Thermosynechococcus sp. WL17     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2206345..2218042
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHI18_RS10825 (RHI18_10825) - 2206715..2207416 (-) 702 WP_310743049.1 PilN domain-containing protein -
  RHI18_RS10830 (RHI18_10830) pilM 2207428..2208507 (-) 1080 WP_225901572.1 type IV pilus biogenesis protein PilM Machinery gene
  RHI18_RS10835 (RHI18_10835) - 2208781..2209362 (-) 582 WP_310743050.1 L,D-transpeptidase -
  RHI18_RS10840 (RHI18_10840) - 2209392..2209823 (-) 432 WP_286625069.1 hypothetical protein -
  RHI18_RS10845 (RHI18_10845) - 2209993..2211222 (-) 1230 WP_310453502.1 acetate kinase -
  RHI18_RS10850 (RHI18_10850) comA 2211345..2213042 (+) 1698 WP_310743051.1 phospholipase D-like domain-containing protein Machinery gene
  RHI18_RS10855 (RHI18_10855) - 2213070..2213582 (-) 513 WP_206200182.1 adenine phosphoribosyltransferase -
  RHI18_RS10860 (RHI18_10860) - 2213632..2214936 (-) 1305 WP_206200183.1 NCS2 family permease -
  RHI18_RS10865 (RHI18_10865) - 2215331..2217052 (+) 1722 WP_310743052.1 hypothetical protein -
  RHI18_RS10870 (RHI18_10870) - 2217070..2217861 (+) 792 WP_310743053.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -

Sequence

Protein


Download         Length: 565 a.a.        Molecular weight: 63106.79 Da        Isoelectric Point: 9.0586

>NTDB_id=879075 RHI18_RS10850 WP_310743051.1 2211345..2213042(+) (comA) [Thermosynechococcus sp. WL17]
MFWQKLKWRRHGVYLLLFLLGLLIAAVVLTQLRSHPILRPALDPLPQHPQIAVHMNHSQAHSYQEPYRPYTREGEDLEAI
MIEQIAKAQKTIDVAVQEFRLPNLAKALVARQQAGVRVRVVMENTYTAPWATYSPAQVSAMDPRMRERYNAWKALVDTNG
DGQLSAAELSDRDVQTILNEAKIPWIDDTADGSKGSMLMHHKFIVIDNRQVIATTANFTLSDVHGDLGRPDTRGNANSLL
VIDSPAVARLFTEEFNIMWGDGPGGQPNSRFGVKKPVRPPQRVAVGDAMVTVRFSPTPRSQPWAASTNGLIGQTLRRARQ
KIDMALFVFSDQELSYVLEERHNQGVSIRALIDSGFIYRDFSEALDMMGVAMANTAQARQGNCYYEAGNRPWQNPIQTVG
TPLLPEGDKLHHKYGVVDDRTVIVGSHNWSEAANRGNDEFLLVIEHPTVAAHYEREFERLYSNSRLGLPQHIRDRIQQQL
TACGGKIATRPAPSSGNRASTPTTRVNLNTATAEELQTLPGVGPKLAAEIIRAREQKPFQSLADLDAVPGVGPKLLERLR
DRVTW

Nucleotide


Download         Length: 1698 bp        

>NTDB_id=879075 RHI18_RS10850 WP_310743051.1 2211345..2213042(+) (comA) [Thermosynechococcus sp. WL17]
GTGTTTTGGCAAAAGCTTAAATGGCGGCGACACGGTGTGTATCTGCTGTTGTTTCTATTGGGGCTGTTGATTGCGGCTGT
GGTGCTCACTCAATTGCGATCGCACCCAATTCTCCGCCCTGCCCTAGACCCGCTGCCTCAACATCCGCAAATCGCGGTAC
ACATGAATCACTCCCAAGCCCACAGTTATCAAGAACCCTATCGCCCCTATACCCGTGAAGGGGAAGACCTTGAGGCAATC
ATGATTGAGCAGATTGCCAAGGCACAAAAGACGATTGATGTGGCGGTGCAGGAGTTTCGCCTACCCAATCTGGCCAAGGC
CCTAGTAGCACGGCAGCAGGCGGGAGTGCGGGTACGAGTGGTGATGGAAAATACCTACACTGCGCCTTGGGCAACCTACA
GCCCTGCGCAAGTGAGCGCCATGGATCCGAGAATGCGGGAGCGCTACAACGCCTGGAAAGCCCTCGTGGATACCAATGGC
GATGGCCAACTCAGTGCAGCGGAACTCAGCGATCGCGATGTGCAGACGATTCTCAACGAGGCCAAGATTCCTTGGATTGA
TGACACTGCCGATGGCTCTAAAGGCAGTATGCTCATGCACCACAAGTTTATCGTTATTGATAATCGCCAAGTCATTGCCA
CTACTGCCAACTTTACCCTCAGTGATGTCCATGGCGACTTGGGACGACCCGATACCCGTGGCAATGCCAACTCCCTCTTG
GTGATTGATAGCCCCGCCGTGGCACGCCTATTTACTGAGGAATTCAACATTATGTGGGGGGATGGTCCCGGTGGTCAGCC
CAACAGTCGCTTTGGGGTCAAAAAGCCAGTGCGTCCCCCTCAACGGGTGGCTGTGGGCGATGCCATGGTCACGGTGCGCT
TTTCGCCAACCCCGCGATCGCAACCCTGGGCGGCCTCTACCAATGGCTTGATTGGCCAAACACTACGTCGAGCACGCCAA
AAAATTGATATGGCGCTCTTTGTTTTCTCCGATCAGGAGTTGTCCTACGTGCTTGAGGAACGCCATAACCAAGGGGTTAG
CATTCGTGCCCTCATTGACTCAGGATTTATCTACCGTGACTTTAGCGAAGCCCTCGATATGATGGGGGTAGCGATGGCCA
ATACTGCCCAAGCCCGTCAAGGCAACTGTTACTACGAAGCCGGCAACCGCCCGTGGCAAAACCCCATTCAAACGGTGGGC
ACCCCCCTCCTACCAGAGGGCGATAAGCTGCACCACAAGTATGGCGTGGTTGACGATCGCACGGTGATTGTGGGTTCCCA
CAACTGGTCCGAGGCGGCCAACCGCGGCAATGATGAATTCTTGCTGGTCATCGAGCATCCTACGGTTGCAGCTCACTACG
AACGGGAGTTTGAGCGCCTCTATAGCAATAGTCGTTTGGGTCTGCCGCAGCATATTCGCGATCGCATTCAGCAGCAGTTG
ACCGCCTGTGGTGGTAAGATTGCCACCCGACCTGCCCCCTCTTCAGGAAATCGTGCCAGCACGCCGACTACACGGGTGAA
CTTGAACACGGCCACCGCAGAGGAACTGCAAACCCTACCGGGCGTCGGCCCCAAACTGGCGGCTGAAATTATCCGTGCTC
GCGAGCAAAAGCCCTTTCAATCCTTGGCGGATTTAGATGCTGTCCCCGGTGTCGGGCCGAAGCTCCTCGAACGCTTGCGC
GATCGCGTGACGTGGTAA

Domains

Predicted by InterproScan.

PLD-like domain (PLDc_2)

(313-460)

PLD-like domain (PLDc_2)

(81-259)

Helix-hairpin-helix motif (HHH_3)

(504-564)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Synechocystis sp. PCC 6803

49.47

100

0.496