Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   RHH53_RS01730 Genome accession   NZ_CP134169
Coordinates   361935..363326 (+) Length   463 a.a.
NCBI ID   WP_310744004.1    Uniprot ID   -
Organism   Thermosynechococcus sp. PKX82     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 356935..368326
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHH53_RS01700 (RHH53_01700) - 358205..358855 (+) 651 WP_302678682.1 phosphorylase -
  RHH53_RS01705 (RHH53_01705) - 358884..360296 (+) 1413 WP_225901616.1 serine/threonine-protein kinase -
  RHH53_RS01710 (RHH53_01710) - 360262..360759 (-) 498 WP_206200793.1 GNAT family N-acetyltransferase -
  RHH53_RS01715 (RHH53_01715) secG 360771..361004 (-) 234 WP_149821094.1 preprotein translocase subunit SecG -
  RHH53_RS01720 (RHH53_01720) - 361114..361434 (+) 321 WP_149821092.1 phasin family protein -
  RHH53_RS01725 (RHH53_01725) - 361428..361916 (+) 489 WP_149821090.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  RHH53_RS01730 (RHH53_01730) radA 361935..363326 (+) 1392 WP_310744004.1 DNA repair protein RadA Machinery gene
  RHH53_RS01735 (RHH53_01735) cobU 363330..363896 (-) 567 WP_310743282.1 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase -
  RHH53_RS01740 (RHH53_01740) - 363913..364743 (-) 831 WP_310744005.1 ABC transporter permease -
  RHH53_RS01745 (RHH53_01745) argF 364751..365665 (-) 915 WP_302678687.1 ornithine carbamoyltransferase -
  RHH53_RS01750 (RHH53_01750) plsY 365807..366442 (-) 636 WP_310744006.1 glycerol-3-phosphate 1-O-acyltransferase PlsY -
  RHH53_RS01755 (RHH53_01755) - 366453..367421 (-) 969 WP_206200799.1 DUF3086 domain-containing protein -
  RHH53_RS01760 (RHH53_01760) - 367411..367815 (-) 405 WP_206200800.1 DUF3119 family protein -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 49577.18 Da        Isoelectric Point: 7.6433

>NTDB_id=878985 RHH53_RS01730 WP_310744004.1 361935..363326(+) (radA) [Thermosynechococcus sp. PKX82]
MPKAKVLYICRECGAESVQYFGRCPNCGQWNTLDEQVVTPVETAARPTTPRKSTTPHPRSAKALGEISEQTQSRSASGFA
ELDRVLGGGIVVGSLVLVAGEPGIGKSTLLLQMAATLGQQQRVLYVCAEESAQQVKLRSQRLGIAASPSLYLLAETNLEV
ILQELTHLQPHLAIIDSIQAVYLPQLTAAPGSVSQVREGTAALMRLAKREQMSLFIVGHVTKEGAIAGPKVLEHLVDTVL
YFEGDRFASHRLVRAVKNRFGASQEIGVFEMGAQGLAEVTNPSALFLGDREPTPGTATIVACEGTRPLVVELQSLVSPTS
YPSPRRTATGIEYNRFLQILAVLEKRLGVPLSKLDAYVASAGGLNVAEPAADLGVAVAVVASFRDRWVHPQTVIIGEVGL
GGQVRAVSQLEVRLREALKLGFRRAIIPENQACAIAGLEIYPVRRVTDAIVAALAPMTTEESP

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=878985 RHH53_RS01730 WP_310744004.1 361935..363326(+) (radA) [Thermosynechococcus sp. PKX82]
ATGCCCAAGGCCAAGGTACTGTACATCTGCCGCGAGTGTGGTGCCGAGTCTGTGCAATACTTTGGTCGCTGTCCCAACTG
TGGTCAGTGGAATACCCTTGATGAGCAGGTGGTTACCCCTGTAGAGACCGCTGCTCGACCCACAACCCCCCGAAAATCGA
CCACTCCCCACCCCCGCAGTGCCAAGGCCCTAGGAGAGATTAGCGAACAGACACAGAGCCGTTCTGCCTCCGGATTTGCC
GAGTTGGATCGGGTTTTGGGAGGGGGGATTGTGGTTGGCTCCCTCGTGTTGGTGGCTGGCGAACCGGGAATTGGCAAGTC
CACGCTTTTGTTGCAGATGGCAGCCACCTTAGGGCAACAGCAGCGGGTGCTCTATGTCTGTGCTGAGGAATCGGCGCAGC
AGGTGAAATTGCGATCGCAACGACTGGGCATTGCCGCCTCTCCCTCGCTCTATCTTTTGGCGGAGACGAATTTGGAGGTG
ATCCTGCAGGAGCTGACCCATCTGCAACCCCATCTGGCGATTATTGATAGCATCCAAGCGGTGTATCTGCCCCAATTGAC
GGCTGCCCCCGGCTCGGTGTCTCAGGTTCGTGAGGGCACAGCCGCCTTGATGCGCTTAGCCAAGCGGGAGCAGATGAGTC
TCTTTATTGTGGGGCATGTTACAAAGGAGGGGGCGATCGCCGGTCCGAAGGTGCTGGAACATTTGGTGGATACCGTGCTC
TACTTTGAGGGCGATCGCTTTGCCAGTCACCGCCTCGTACGCGCTGTCAAAAACCGCTTTGGGGCTAGTCAAGAAATTGG
CGTTTTTGAAATGGGCGCGCAGGGCTTAGCCGAGGTCACAAATCCTTCGGCGCTGTTTTTGGGCGATCGCGAGCCAACCC
CCGGTACCGCCACCATTGTGGCCTGTGAAGGCACCCGTCCGCTTGTGGTTGAGTTGCAAAGTTTAGTTAGCCCCACCAGT
TATCCCTCTCCACGCCGCACGGCCACGGGCATTGAGTACAATCGCTTTTTGCAAATTCTGGCCGTCCTAGAAAAACGCCT
AGGGGTGCCCCTCTCGAAGCTAGATGCCTATGTGGCGTCCGCTGGCGGGCTGAATGTGGCGGAACCCGCTGCTGATCTGG
GGGTGGCAGTGGCTGTTGTGGCTAGTTTTCGCGATCGCTGGGTGCACCCCCAAACCGTGATCATTGGCGAAGTGGGCTTA
GGGGGACAGGTGCGAGCCGTCTCCCAGTTAGAAGTACGGCTGCGGGAGGCGCTGAAGTTGGGATTTCGCCGTGCCATTAT
TCCCGAAAACCAAGCCTGTGCGATCGCGGGGCTAGAGATTTATCCTGTACGTCGTGTCACCGATGCCATTGTGGCTGCCC
TTGCCCCCATGACCACTGAGGAATCCCCCTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(72-224)

Subunit ChlI of Mg-chelatase (ChlI)

(370-430)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.13

99.352

0.488
  radA Streptococcus mitis NCTC 12261

49.771

94.168

0.469
  radA Streptococcus pneumoniae Rx1

49.771

94.168

0.469
  radA Streptococcus pneumoniae D39

49.771

94.168

0.469
  radA Streptococcus pneumoniae R6

49.771

94.168

0.469
  radA Streptococcus pneumoniae TIGR4

49.771

94.168

0.469
  radA Streptococcus mitis SK321

49.771

94.168

0.469