Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   AABJ55_RS10000 Genome accession   NZ_AP027612
Coordinates   1999103..1999618 (-) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain LR-72     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1994103..2004618
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABJ55_RS09975 (VEE35_19210) ygaZ 1994502..1995239 (+) 738 WP_000445651.1 L-valine exporter subunit YgaZ -
  AABJ55_RS09980 (VEE35_19220) ygaH 1995229..1995564 (+) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  AABJ55_RS09985 (VEE35_19230) emrR 1995655..1996185 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  AABJ55_RS09990 (VEE35_19240) emrA 1996312..1997484 (+) 1173 WP_049254708.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  AABJ55_RS09995 (VEE35_19250) emrB 1997501..1999039 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  AABJ55_RS10000 (VEE35_19260) luxS 1999103..1999618 (-) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  AABJ55_RS10005 (VEE35_19270) gshA 1999768..2001324 (-) 1557 WP_023281437.1 glutamate--cysteine ligase -
  AABJ55_RS10010 (VEE35_19280) yqaA 2001397..2001825 (-) 429 WP_001287454.1 YqaA family protein -
  AABJ55_RS10015 (VEE35_19290) yqaB 2001822..2002388 (-) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  AABJ55_RS10045 (VEE35_19300) csrA 2003981..2004166 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=87898 AABJ55_RS10000 WP_001130211.1 1999103..1999618(-) (luxS) [Escherichia coli strain LR-72]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=87898 AABJ55_RS10000 WP_001130211.1 1999103..1999618(-) (luxS) [Escherichia coli strain LR-72]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment