Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   RHH27_RS11125 Genome accession   NZ_CP134168
Coordinates   2263292..2264989 (+) Length   565 a.a.
NCBI ID   WP_302678303.1    Uniprot ID   -
Organism   Thermosynechococcus sp. PP555     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2258292..2269989
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHH27_RS11100 (RHH27_11100) - 2258672..2259373 (-) 702 WP_302678300.1 PilN domain-containing protein -
  RHH27_RS11105 (RHH27_11105) pilM 2259385..2260464 (-) 1080 WP_225901572.1 type IV pilus biogenesis protein PilM Machinery gene
  RHH27_RS11110 (RHH27_11110) - 2260728..2261309 (-) 582 WP_206200178.1 L,D-transpeptidase -
  RHH27_RS11115 (RHH27_11115) - 2261339..2261770 (-) 432 WP_302678301.1 hypothetical protein -
  RHH27_RS11120 (RHH27_11120) - 2261940..2263169 (-) 1230 WP_302678302.1 acetate/propionate family kinase -
  RHH27_RS11125 (RHH27_11125) comA 2263292..2264989 (+) 1698 WP_302678303.1 phospholipase D-like domain-containing protein Machinery gene
  RHH27_RS11130 (RHH27_11130) - 2265017..2265529 (-) 513 WP_206200182.1 adenine phosphoribosyltransferase -
  RHH27_RS11135 (RHH27_11135) - 2265579..2266883 (-) 1305 WP_206200183.1 NCS2 family permease -
  RHH27_RS11140 (RHH27_11140) - 2267278..2268999 (+) 1722 WP_302678304.1 hypothetical protein -
  RHH27_RS11145 (RHH27_11145) - 2269017..2269808 (+) 792 WP_302678305.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -

Sequence

Protein


Download         Length: 565 a.a.        Molecular weight: 63124.71 Da        Isoelectric Point: 8.4300

>NTDB_id=878979 RHH27_RS11125 WP_302678303.1 2263292..2264989(+) (comA) [Thermosynechococcus sp. PP555]
MFWQKLKWRRHGVYLLLFLLGLLIAAVVLTQLRSHPILRPALDPLPQHPQIAVHMNHSQAHSYQEPYRPYTREGEDLEAI
MIEQIAKAQKTIDVAVQEFRLPNLAKALVARQQAGVRVRVVMENTYTAPWATYSPAQVSAMDPRMRERYNDWKALVDTNG
DGQLSAAELSDRDVQTILNEAKIPWIDDTADGSKGSMLMHHKFIVIDNRQVIATSANFTLSDVHGDLGRPDTRGNANSLL
VIDSPAVARLFTEEFNIMWGDGPGGQPNSRFGVKKPVRPPQRVAVGDAMVTVRFSPTPRSQPWAASTNGLIGQTLNRSRQ
KIDMALFVFSDQELSYVLEERHNQGVSIRALIDSGFIYRDFSEALDMMGVAMANTAQARQGNCYYEAGNRPWQNPIQTVG
TPLLPEGDKLHHKYGVVDDRTLIVGSHNWSEAANRGNDEFLLVIEHPTVAAHYEREFERLYSNSRLGLPQHIRDRIQQQL
TACGGKIATRPAPSSGNRASTPTTRVNLNTATAEELQTLPGVGPKLAAEIIRAREQKPFQSLADLDAVPGVGPKLLERLR
DRVTW

Nucleotide


Download         Length: 1698 bp        

>NTDB_id=878979 RHH27_RS11125 WP_302678303.1 2263292..2264989(+) (comA) [Thermosynechococcus sp. PP555]
GTGTTTTGGCAAAAGCTTAAATGGCGGCGACACGGTGTGTATCTGCTGTTGTTTCTACTGGGGCTATTAATTGCCGCCGT
GGTGCTCACTCAATTGCGATCGCACCCAATTCTCCGCCCTGCCCTAGACCCGCTGCCTCAACATCCGCAAATCGCGGTAC
ACATGAATCACTCCCAAGCCCACAGTTATCAAGAACCCTATCGCCCCTATACCCGTGAAGGGGAAGACCTTGAGGCAATC
ATGATTGAGCAGATTGCCAAGGCACAAAAGACGATTGATGTGGCGGTGCAGGAGTTTCGCCTACCCAATCTGGCCAAGGC
CCTAGTAGCACGGCAGCAGGCGGGAGTGCGGGTACGAGTGGTGATGGAAAATACCTACACTGCGCCTTGGGCAACCTACA
GCCCTGCGCAAGTGAGCGCCATGGATCCGAGAATGCGGGAGCGCTACAACGACTGGAAAGCCCTCGTGGATACCAATGGC
GATGGCCAACTCAGTGCAGCGGAACTCAGCGATCGCGATGTGCAGACGATTCTCAACGAGGCCAAGATTCCTTGGATTGA
TGACACTGCCGATGGCTCTAAAGGCAGTATGCTCATGCACCACAAGTTTATCGTTATTGATAATCGCCAAGTCATTGCCA
CTAGTGCCAACTTTACCCTCAGTGATGTCCATGGCGACTTGGGACGACCCGATACCCGTGGCAATGCCAACTCCCTCTTG
GTGATTGATAGCCCCGCGGTGGCACGCCTATTTACTGAGGAATTCAACATTATGTGGGGGGATGGTCCCGGTGGTCAGCC
CAACAGTCGCTTTGGGGTCAAAAAGCCAGTGCGTCCCCCTCAACGGGTGGCTGTGGGCGATGCCATGGTCACGGTGCGCT
TTTCGCCAACCCCGCGATCGCAACCCTGGGCGGCCTCTACCAACGGCCTCATTGGTCAAACTCTGAATCGCAGTCGCCAA
AAAATTGATATGGCGCTCTTTGTTTTCTCCGATCAGGAGTTGTCCTACGTGCTTGAGGAACGCCATAACCAAGGGGTTAG
CATTCGTGCCCTCATTGACTCAGGATTTATCTACCGTGACTTTAGCGAAGCCCTCGATATGATGGGGGTAGCGATGGCCA
ATACTGCCCAAGCCCGTCAAGGCAACTGTTACTACGAAGCCGGCAACCGCCCGTGGCAAAACCCCATTCAAACGGTGGGC
ACCCCCCTCCTACCAGAAGGCGATAAGCTGCACCACAAGTATGGCGTGGTTGACGATCGCACGCTGATTGTGGGTTCCCA
CAACTGGTCCGAGGCGGCCAACCGCGGTAATGATGAATTCTTGCTGGTCATCGAGCATCCTACGGTTGCAGCTCACTACG
AACGGGAGTTTGAGCGGCTCTATAGCAATAGTCGTTTGGGGCTGCCGCAGCATATTCGCGATCGCATTCAGCAGCAGTTG
ACCGCCTGTGGTGGTAAGATTGCCACCCGACCTGCCCCCTCTTCAGGAAATCGTGCCAGCACGCCGACTACACGGGTGAA
CTTGAACACGGCCACCGCAGAGGAACTGCAAACCCTACCGGGCGTCGGCCCCAAACTGGCGGCTGAAATTATCCGTGCTC
GCGAGCAAAAGCCCTTTCAATCCTTGGCCGATCTAGATGCTGTCCCCGGTGTCGGGCCGAAGCTCCTCGAACGCTTGCGC
GATCGCGTGACGTGGTAA

Domains

Predicted by InterproScan.

PLD-like domain (PLDc_2)

(81-259)

PLD-like domain (PLDc_2)

(313-460)

Helix-hairpin-helix motif (HHH_3)

(504-564)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Synechocystis sp. PCC 6803

49.47

100

0.496