Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   RHH27_RS01675 Genome accession   NZ_CP134168
Coordinates   361369..362760 (+) Length   463 a.a.
NCBI ID   WP_302678684.1    Uniprot ID   -
Organism   Thermosynechococcus sp. PP555     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 356369..367760
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHH27_RS01645 (RHH27_01645) - 357639..358289 (+) 651 WP_302678682.1 phosphorylase -
  RHH27_RS01650 (RHH27_01650) - 358318..359730 (+) 1413 WP_225901616.1 serine/threonine-protein kinase -
  RHH27_RS01655 (RHH27_01655) - 359696..360193 (-) 498 WP_206200793.1 GNAT family N-acetyltransferase -
  RHH27_RS01660 (RHH27_01660) secG 360205..360438 (-) 234 WP_149821094.1 preprotein translocase subunit SecG -
  RHH27_RS01665 (RHH27_01665) - 360548..360868 (+) 321 WP_149821092.1 phasin family protein -
  RHH27_RS01670 (RHH27_01670) - 360862..361350 (+) 489 WP_302678683.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  RHH27_RS01675 (RHH27_01675) radA 361369..362760 (+) 1392 WP_302678684.1 DNA repair protein RadA Machinery gene
  RHH27_RS01680 (RHH27_01680) cobU 362764..363330 (-) 567 WP_302678685.1 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase -
  RHH27_RS01685 (RHH27_01685) - 363347..364177 (-) 831 WP_302678686.1 ABC transporter permease -
  RHH27_RS01690 (RHH27_01690) argF 364185..365099 (-) 915 WP_302678687.1 ornithine carbamoyltransferase -
  RHH27_RS01695 (RHH27_01695) plsY 365241..365876 (-) 636 WP_302678688.1 glycerol-3-phosphate 1-O-acyltransferase PlsY -
  RHH27_RS01700 (RHH27_01700) - 365887..366855 (-) 969 WP_206200799.1 DUF3086 domain-containing protein -
  RHH27_RS01705 (RHH27_01705) - 366845..367249 (-) 405 WP_206200800.1 DUF3119 family protein -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 49650.28 Da        Isoelectric Point: 7.9190

>NTDB_id=878969 RHH27_RS01675 WP_302678684.1 361369..362760(+) (radA) [Thermosynechococcus sp. PP555]
MPKAKVLYICRECGAESVQYFGRCPNCGQWNTLDEQVVSPVETAARRTTPRKSTTPHPRSAKALGEISEQTQSRSASGFA
ELDRVLGGGIVVGSLVLVAGEPGIGKSTLLLQMAATLGQQQRVLYVCAEESAQQVKLRSQRLGIAASPSLYLLAETNLEV
ILQELTHLQPHLAIIDSIQAVYLPQLTAAPGSVSQVREGTAALMRLAKREQMSLFIVGHVTKEGAIAGPKVLEHLVDTVL
YFEGDRFASHRLVRAVKNRFGASQEIGVFEMGAQGLAEVTNPSALFLGDREPTPGTATIVACEGTRPLVVELQSLVSPTS
YPSPRRTATGIEYNRFLQILAVLEKRLGVPLSKLDAYVASAAGLNVAEPAADLGVAVAVVASFRDRWVHPQTVIIGEVGL
GGQVRAVSQLELRLREALKLGFRRAIIPENQACAIAGLEIYPVRRVTDAIVAALAPMTTEESP

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=878969 RHH27_RS01675 WP_302678684.1 361369..362760(+) (radA) [Thermosynechococcus sp. PP555]
ATGCCCAAGGCCAAGGTACTGTACATCTGCCGCGAGTGTGGTGCCGAGTCTGTGCAATACTTTGGTCGCTGTCCCAACTG
TGGTCAGTGGAATACCCTTGATGAGCAGGTGGTTAGCCCTGTAGAGACCGCTGCTCGACGCACAACCCCCCGAAAATCGA
CCACTCCCCACCCCCGCAGTGCCAAGGCCCTAGGAGAGATTAGCGAACAGACACAGAGCCGTTCTGCCTCCGGATTTGCC
GAGTTGGATCGGGTTTTGGGAGGGGGGATTGTGGTTGGCTCCCTCGTGTTGGTGGCTGGCGAACCGGGAATTGGCAAGTC
CACGCTTTTGTTGCAGATGGCAGCCACCTTAGGGCAACAGCAGCGGGTGCTCTATGTCTGTGCTGAGGAATCGGCGCAGC
AGGTGAAATTGCGATCGCAACGACTGGGCATTGCCGCCTCCCCCTCGCTCTATCTTTTGGCGGAGACGAATTTGGAGGTG
ATCCTGCAGGAGCTGACCCATCTGCAACCCCATCTGGCGATTATTGATAGCATCCAAGCGGTGTATCTGCCCCAATTGAC
GGCTGCCCCCGGCTCGGTGTCTCAGGTTCGTGAGGGCACAGCCGCCTTGATGCGCTTAGCCAAGCGGGAGCAGATGAGTC
TCTTTATTGTGGGGCATGTTACAAAGGAGGGGGCGATCGCCGGTCCGAAGGTGCTGGAACATTTGGTGGATACCGTGCTC
TACTTTGAGGGCGATCGCTTTGCCAGTCACCGCCTCGTACGCGCTGTCAAAAACCGCTTTGGGGCTAGTCAAGAAATTGG
CGTTTTTGAAATGGGCGCGCAGGGCTTAGCCGAGGTCACAAATCCTTCGGCGCTGTTTTTGGGCGATCGCGAGCCAACCC
CCGGTACCGCCACCATTGTGGCCTGTGAAGGCACCCGTCCGCTTGTGGTTGAGTTGCAAAGTTTAGTTAGCCCCACCAGT
TATCCCTCTCCACGCCGCACGGCCACGGGCATTGAGTACAATCGCTTTTTGCAAATTCTGGCCGTCCTAGAAAAACGCCT
AGGGGTGCCCCTCTCGAAGCTAGATGCCTATGTGGCGTCCGCTGCCGGGCTGAATGTGGCGGAACCCGCTGCTGATCTGG
GGGTGGCAGTGGCTGTTGTGGCTAGTTTTCGCGATCGCTGGGTGCACCCCCAAACGGTGATCATTGGCGAAGTGGGCTTA
GGGGGACAGGTGCGAGCGGTTTCCCAGTTAGAATTACGGCTGCGGGAGGCGCTGAAGTTGGGATTTCGCCGTGCCATTAT
TCCCGAAAACCAAGCCTGTGCGATCGCGGGGCTAGAGATTTATCCTGTACGTCGTGTCACCGATGCCATTGTGGCTGCCC
TTGCCCCCATGACCACTGAGGAATCCCCCTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(72-224)

Subunit ChlI of Mg-chelatase (ChlI)

(364-430)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.913

99.352

0.486
  radA Streptococcus mitis NCTC 12261

49.541

94.168

0.467
  radA Streptococcus pneumoniae Rx1

49.541

94.168

0.467
  radA Streptococcus pneumoniae D39

49.541

94.168

0.467
  radA Streptococcus pneumoniae R6

49.541

94.168

0.467
  radA Streptococcus pneumoniae TIGR4

49.541

94.168

0.467
  radA Streptococcus mitis SK321

49.541

94.168

0.467