Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   RHG98_RS10895 Genome accession   NZ_CP134166
Coordinates   2216619..2218316 (+) Length   565 a.a.
NCBI ID   WP_310744550.1    Uniprot ID   -
Organism   Thermosynechococcus sp. PP22     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2211619..2223316
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHG98_RS10870 (RHG98_10870) - 2211998..2212699 (-) 702 WP_206200176.1 PilN domain-containing protein -
  RHG98_RS10875 (RHG98_10875) pilM 2212711..2213790 (-) 1080 WP_225901572.1 type IV pilus biogenesis protein PilM Machinery gene
  RHG98_RS10880 (RHG98_10880) - 2214054..2214635 (-) 582 WP_310743050.1 L,D-transpeptidase -
  RHG98_RS10885 (RHG98_10885) - 2214665..2215096 (-) 432 WP_286625069.1 hypothetical protein -
  RHG98_RS10890 (RHG98_10890) - 2215267..2216496 (-) 1230 WP_310744549.1 acetate kinase -
  RHG98_RS10895 (RHG98_10895) comA 2216619..2218316 (+) 1698 WP_310744550.1 phospholipase D-like domain-containing protein Machinery gene
  RHG98_RS10900 (RHG98_10900) - 2218344..2218856 (-) 513 WP_206200182.1 adenine phosphoribosyltransferase -
  RHG98_RS10905 (RHG98_10905) - 2218906..2220210 (-) 1305 WP_310744551.1 NCS2 family permease -
  RHG98_RS10910 (RHG98_10910) - 2220605..2222326 (+) 1722 WP_310744552.1 hypothetical protein -
  RHG98_RS10915 (RHG98_10915) - 2222344..2223135 (+) 792 WP_206200185.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -

Sequence

Protein


Download         Length: 565 a.a.        Molecular weight: 63170.87 Da        Isoelectric Point: 9.0586

>NTDB_id=878947 RHG98_RS10895 WP_310744550.1 2216619..2218316(+) (comA) [Thermosynechococcus sp. PP22]
MFWQKLKWRRHGVYLLLFLLGLLIAAVVLTQLRSHPILRPALDPLPQHPQIAVHMNHSQAHSYQEPYRPYTREGEDLEAI
MIEQIAKAQKTIDVAVQEFRLPNLAKALVARQQAGVRVRVVMENTYTAPWATYSPAQVSAMDPRMRERYNAWKALVDTNG
DGQLSAAELSDRDVQTILNEAKIPWIDDTADGSKGSMLMHHKFIVIDNRQVIATTANFTLSDVHGDLGRPDTRGNANSLL
VIDSPAVARLFTEEFNIMWGDGPGGQPNSRFGVKKPVRPPQRVAVGDAMVTVRFSPTPRSQPWAASTNGLLGQTLRRARQ
KIDMALFVFSDQELSYVLEERHNQGVSIRALIDSGFIYRDFSEALDMMGVAMANTAQARQGNCYYEAGNRPWQNPIQTVG
TPLLPEGDKLHHKYGVVDDRTLIVGSHNWSEAANRGNDEFLLVIEHPTVAAHYEREFERLYSNSRLGLPQHIRDRIQQQL
TACGGKIATRFAPSSGNRASTPTTRVNLNTATAEELQTLPGVGPKLAAEIIRAREQKPFQSLADLDAVPGVGPKLLERLR
DRVTW

Nucleotide


Download         Length: 1698 bp        

>NTDB_id=878947 RHG98_RS10895 WP_310744550.1 2216619..2218316(+) (comA) [Thermosynechococcus sp. PP22]
GTGTTTTGGCAAAAGCTTAAATGGCGGCGACACGGTGTGTATCTGCTGTTGTTTCTATTGGGGCTGTTGATTGCGGCTGT
GGTGCTCACTCAATTGCGATCGCACCCAATTCTCCGCCCTGCCCTAGACCCGCTGCCTCAACATCCGCAAATCGCGGTAC
ACATGAATCACTCCCAAGCCCACAGTTATCAAGAACCCTATCGCCCCTATACCCGTGAAGGGGAAGACCTTGAGGCAATC
ATGATTGAGCAGATTGCCAAGGCACAAAAGACGATTGATGTGGCGGTGCAGGAGTTTCGCCTACCCAATCTGGCCAAGGC
CCTAGTAGCACGGCAGCAGGCGGGAGTGCGGGTACGAGTGGTGATGGAAAATACCTACACTGCGCCTTGGGCAACCTACA
GCCCTGCGCAAGTAAGCGCCATGGATCCGAGGATGCGGGAGCGCTACAACGCCTGGAAAGCCCTCGTGGATACCAATGGC
GATGGCCAACTCAGTGCAGCGGAACTCAGCGATCGCGATGTGCAGACGATTCTCAACGAGGCCAAGATTCCTTGGATTGA
TGACACTGCCGATGGCTCTAAAGGCAGTATGCTCATGCACCACAAGTTTATCGTGATTGATAATCGCCAAGTCATTGCCA
CTACAGCGAACTTTACCCTCAGTGATGTCCATGGCGACTTGGGACGACCCGATACCCGTGGCAATGCCAACTCCCTCTTG
GTGATTGATAGCCCTGCCGTGGCACGCCTATTTACTGAGGAATTCAACATTATGTGGGGCGATGGTCCCGGTGGTCAGCC
CAACAGTCGCTTTGGGGTCAAAAAGCCAGTGCGTCCCCCTCAACGGGTGGCTGTGGGCGATGCCATGGTCACGGTGCGCT
TTTCGCCAACCCCGCGATCGCAACCTTGGGCGGCCTCTACCAATGGCTTGCTTGGCCAAACACTACGTCGAGCACGCCAA
AAAATTGATATGGCGCTTTTTGTTTTCTCCGATCAGGAGTTGTCCTACGTGCTTGAGGAACGCCATAACCAAGGGGTTAG
CATTCGTGCCCTCATTGACTCAGGATTTATCTACCGTGACTTTAGCGAAGCCCTCGATATGATGGGGGTAGCGATGGCCA
ATACTGCCCAAGCCCGTCAAGGCAACTGTTACTACGAAGCCGGCAACCGCCCGTGGCAAAACCCCATTCAAACGGTGGGC
ACCCCCCTCCTACCAGAAGGCGATAAGCTGCACCACAAGTATGGCGTGGTTGACGATCGCACGCTGATTGTGGGTTCCCA
CAACTGGTCCGAGGCGGCCAACCGCGGCAATGATGAATTCTTGCTGGTCATCGAGCATCCTACGGTTGCAGCTCACTACG
AACGGGAGTTTGAGCGCCTCTATAGCAATAGTCGTTTGGGTCTGCCGCAGCATATTCGCGATCGCATTCAGCAGCAGTTG
ACCGCCTGTGGTGGTAAGATTGCCACCCGATTTGCCCCCTCTTCAGGAAATCGTGCCAGCACGCCGACTACACGGGTGAA
CTTGAACACGGCCACCGCAGAGGAACTGCAAACCCTACCGGGCGTCGGCCCCAAACTGGCGGCTGAAATTATCCGTGCTC
GCGAGCAAAAGCCCTTTCAATCCTTGGCCGATCTAGATGCTGTCCCCGGTGTCGGGCCGAAGCTCCTCGAACGCTTGCGC
GATCGCGTGACGTGGTAA

Domains

Predicted by InterproScan.

PLD-like domain (PLDc_2)

(81-259)

PLD-like domain (PLDc_2)

(313-460)

Helix-hairpin-helix motif (HHH_3)

(504-564)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Synechocystis sp. PCC 6803

48.94

100

0.49