Detailed information
Overview
| Name | pilB/pilB1 | Type | Machinery gene |
| Locus tag | RHG98_RS04880 | Genome accession | NZ_CP134166 |
| Coordinates | 1034440..1036464 (-) | Length | 674 a.a. |
| NCBI ID | WP_310744899.1 | Uniprot ID | - |
| Organism | Thermosynechococcus sp. PP22 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1029440..1041464
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RHG98_RS04850 (RHG98_04850) | - | 1029685..1030367 (-) | 683 | Protein_945 | IS630 transposase-related protein | - |
| RHG98_RS04855 (RHG98_04855) | - | 1030917..1031270 (+) | 354 | WP_206201314.1 | hypothetical protein | - |
| RHG98_RS04860 (RHG98_04860) | - | 1031267..1031539 (-) | 273 | WP_149817855.1 | DUF3143 domain-containing protein | - |
| RHG98_RS04865 (RHG98_04865) | - | 1031536..1032009 (-) | 474 | WP_206201315.1 | J domain-containing protein | - |
| RHG98_RS04870 (RHG98_04870) | - | 1032018..1033238 (-) | 1221 | WP_206201316.1 | type II secretion system F family protein | - |
| RHG98_RS04875 (RHG98_04875) | pilT | 1033275..1034372 (-) | 1098 | WP_206201317.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| RHG98_RS04880 (RHG98_04880) | pilB/pilB1 | 1034440..1036464 (-) | 2025 | WP_310744899.1 | GspE/PulE family protein | Machinery gene |
| RHG98_RS04885 (RHG98_04885) | - | 1036726..1036938 (+) | 213 | WP_206201319.1 | hypothetical protein | - |
| RHG98_RS04890 (RHG98_04890) | - | 1036939..1037136 (+) | 198 | WP_206201320.1 | lipopolysaccharide assembly protein LapA domain-containing protein | - |
| RHG98_RS04895 (RHG98_04895) | - | 1037133..1038659 (+) | 1527 | WP_206201321.1 | right-handed parallel beta-helix repeat-containing protein | - |
| RHG98_RS04900 (RHG98_04900) | - | 1038656..1039618 (-) | 963 | WP_206201322.1 | SPOR domain-containing protein | - |
| RHG98_RS04905 (RHG98_04905) | - | 1039709..1040665 (+) | 957 | WP_310744900.1 | glycosyltransferase family 2 protein | - |
| RHG98_RS04910 (RHG98_04910) | leuD | 1040658..1041248 (-) | 591 | WP_206201324.1 | 3-isopropylmalate dehydratase small subunit | - |
Sequence
Protein
Download Length: 674 a.a. Molecular weight: 74428.82 Da Isoelectric Point: 5.5500
>NTDB_id=878939 RHG98_RS04880 WP_310744899.1 1034440..1036464(-) (pilB/pilB1) [Thermosynechococcus sp. PP22]
MVNTSSSSSRKALTVRGRAASPTERAIVASGYASIDQVREAMNTARKTGKSLVTVLQEITGTTMPPDVLRQYHKQQLFEL
KVIYGVDCLDPELNRFPTEQIEELINTIVPIDTCRTYQVIPIAKHLDADPPYLLVAMVDPDNLQAIDNLTRLLRAHNLTL
KRMVITLEDYQRLIDPILNKQVAETTASKSAPAAIGDINIEEDIEAMGGLEELEGEQEVDLAEALKGAEDAPIIALVNKI
LAKALTEGVSDIHIEPQEEYLRIRFRKDGVLHQAFDPLPKKIVPAVVSRFKILADLDIAERRAPQDGRIRKMFQGRRVDF
RVNTLPSRWGEKVVLRILDNSATQLGLDKLITDPESLAIVREMTKRPFGLILVTGPTGSGKTTTLYSALAECNSPGVNIS
TAEDPIEYTLPGLTQVQVIREKGMDFASILRAFLRQDPDVILVGETRDKETAKTAIEAALTGHLVLTTLHTNDAPSAIAR
LSEMGIEPFMVSASLIGVVAQRLMRRVCSECRIPYTPTREELARFGLSASKDVNLTLYKANKLTPEQIQAAKATGQPICN
KCGGLGYKGRVGVYEIMRITERLQRLITEGAPTEQIKEAAVEEGMKTLLAYSLGLVKEGLTTLEEVERVTFTDTGLEAEL
KAKRKSSLTCRTCGAEAQPEWLECPYCMTPRFVD
MVNTSSSSSRKALTVRGRAASPTERAIVASGYASIDQVREAMNTARKTGKSLVTVLQEITGTTMPPDVLRQYHKQQLFEL
KVIYGVDCLDPELNRFPTEQIEELINTIVPIDTCRTYQVIPIAKHLDADPPYLLVAMVDPDNLQAIDNLTRLLRAHNLTL
KRMVITLEDYQRLIDPILNKQVAETTASKSAPAAIGDINIEEDIEAMGGLEELEGEQEVDLAEALKGAEDAPIIALVNKI
LAKALTEGVSDIHIEPQEEYLRIRFRKDGVLHQAFDPLPKKIVPAVVSRFKILADLDIAERRAPQDGRIRKMFQGRRVDF
RVNTLPSRWGEKVVLRILDNSATQLGLDKLITDPESLAIVREMTKRPFGLILVTGPTGSGKTTTLYSALAECNSPGVNIS
TAEDPIEYTLPGLTQVQVIREKGMDFASILRAFLRQDPDVILVGETRDKETAKTAIEAALTGHLVLTTLHTNDAPSAIAR
LSEMGIEPFMVSASLIGVVAQRLMRRVCSECRIPYTPTREELARFGLSASKDVNLTLYKANKLTPEQIQAAKATGQPICN
KCGGLGYKGRVGVYEIMRITERLQRLITEGAPTEQIKEAAVEEGMKTLLAYSLGLVKEGLTTLEEVERVTFTDTGLEAEL
KAKRKSSLTCRTCGAEAQPEWLECPYCMTPRFVD
Nucleotide
Download Length: 2025 bp
>NTDB_id=878939 RHG98_RS04880 WP_310744899.1 1034440..1036464(-) (pilB/pilB1) [Thermosynechococcus sp. PP22]
ATGGTCAACACATCGTCATCTTCTTCTCGGAAAGCACTTACCGTGCGCGGCAGAGCCGCTAGCCCCACAGAACGAGCCAT
TGTTGCCTCCGGTTACGCCAGTATCGATCAGGTGCGGGAAGCCATGAACACCGCCCGCAAAACGGGCAAGTCCCTCGTAA
CCGTGTTGCAGGAGATTACGGGCACCACCATGCCCCCCGATGTGTTACGCCAGTACCACAAGCAACAGCTTTTTGAACTC
AAAGTGATCTACGGGGTTGATTGCCTCGATCCCGAACTCAATCGTTTCCCCACCGAGCAAATCGAGGAACTGATCAACAC
GATTGTACCGATTGACACCTGCCGCACCTACCAAGTCATCCCCATTGCCAAGCACCTCGACGCTGATCCCCCCTATCTGC
TCGTGGCGATGGTGGATCCAGATAACCTCCAAGCCATTGACAACCTCACCCGCTTACTCCGCGCCCACAACCTCACCCTC
AAGCGAATGGTGATCACCCTAGAGGATTACCAACGCCTCATTGACCCGATTCTCAATAAACAGGTAGCTGAAACCACCGC
TAGCAAAAGCGCCCCGGCTGCGATCGGTGACATCAACATCGAAGAAGACATCGAAGCCATGGGCGGCCTCGAAGAGCTGG
AAGGGGAGCAGGAGGTTGACCTTGCTGAGGCGCTGAAAGGTGCAGAAGATGCGCCGATTATTGCCCTTGTCAACAAAATT
TTGGCCAAAGCCCTCACCGAAGGCGTTTCCGACATTCACATCGAACCTCAAGAGGAATACCTGCGGATTCGTTTCCGCAA
AGATGGGGTGCTTCACCAAGCCTTTGATCCACTGCCGAAGAAAATCGTGCCAGCCGTCGTTTCCCGCTTCAAAATCTTGG
CTGACCTTGATATTGCTGAGCGGCGTGCCCCCCAAGATGGTCGTATCCGCAAAATGTTCCAAGGGCGACGGGTGGACTTC
CGAGTGAATACCCTCCCCAGCCGCTGGGGCGAAAAAGTCGTACTGCGGATTCTCGATAACTCCGCCACCCAACTCGGTCT
CGACAAGCTGATTACTGACCCTGAGAGCCTTGCTATTGTGCGGGAGATGACCAAGCGCCCCTTTGGCCTCATCCTCGTTA
CAGGTCCCACTGGTTCAGGGAAAACCACCACGCTTTACTCTGCGCTGGCTGAATGTAATAGTCCCGGTGTCAACATCAGT
ACAGCGGAAGACCCGATTGAATACACGCTCCCCGGCCTAACGCAGGTACAGGTTATTCGCGAAAAAGGCATGGACTTTGC
CTCAATTTTGCGAGCCTTTCTCCGCCAAGACCCCGATGTAATTCTGGTGGGCGAAACCCGTGACAAAGAAACCGCAAAAA
CCGCCATTGAAGCGGCTTTGACGGGGCACTTGGTCTTGACAACCCTGCACACTAACGATGCCCCCAGTGCAATTGCCCGC
CTCTCGGAAATGGGCATTGAACCCTTTATGGTTTCCGCCTCCCTCATTGGGGTTGTTGCCCAACGGCTGATGCGGCGGGT
ATGCAGTGAGTGTCGGATTCCCTATACACCCACCCGTGAGGAACTGGCGCGCTTTGGCTTGTCTGCCTCCAAGGATGTCA
ACCTCACCCTCTACAAAGCCAATAAACTGACACCCGAGCAAATTCAAGCGGCTAAGGCAACTGGCCAACCCATTTGCAAT
AAATGTGGTGGTTTGGGCTACAAAGGACGGGTCGGCGTCTACGAAATTATGCGGATCACCGAGCGACTGCAACGGCTGAT
TACCGAAGGTGCCCCCACCGAGCAAATCAAGGAGGCGGCCGTCGAAGAGGGCATGAAAACCCTGCTTGCCTATAGCTTGG
GGTTAGTCAAGGAAGGACTCACCACCCTCGAAGAAGTGGAGCGCGTCACCTTTACGGACACTGGACTAGAGGCAGAACTC
AAGGCCAAACGTAAGAGTTCTTTAACCTGCCGTACCTGCGGTGCCGAGGCGCAGCCCGAATGGTTAGAATGCCCCTATTG
CATGACACCCCGCTTTGTGGATTAA
ATGGTCAACACATCGTCATCTTCTTCTCGGAAAGCACTTACCGTGCGCGGCAGAGCCGCTAGCCCCACAGAACGAGCCAT
TGTTGCCTCCGGTTACGCCAGTATCGATCAGGTGCGGGAAGCCATGAACACCGCCCGCAAAACGGGCAAGTCCCTCGTAA
CCGTGTTGCAGGAGATTACGGGCACCACCATGCCCCCCGATGTGTTACGCCAGTACCACAAGCAACAGCTTTTTGAACTC
AAAGTGATCTACGGGGTTGATTGCCTCGATCCCGAACTCAATCGTTTCCCCACCGAGCAAATCGAGGAACTGATCAACAC
GATTGTACCGATTGACACCTGCCGCACCTACCAAGTCATCCCCATTGCCAAGCACCTCGACGCTGATCCCCCCTATCTGC
TCGTGGCGATGGTGGATCCAGATAACCTCCAAGCCATTGACAACCTCACCCGCTTACTCCGCGCCCACAACCTCACCCTC
AAGCGAATGGTGATCACCCTAGAGGATTACCAACGCCTCATTGACCCGATTCTCAATAAACAGGTAGCTGAAACCACCGC
TAGCAAAAGCGCCCCGGCTGCGATCGGTGACATCAACATCGAAGAAGACATCGAAGCCATGGGCGGCCTCGAAGAGCTGG
AAGGGGAGCAGGAGGTTGACCTTGCTGAGGCGCTGAAAGGTGCAGAAGATGCGCCGATTATTGCCCTTGTCAACAAAATT
TTGGCCAAAGCCCTCACCGAAGGCGTTTCCGACATTCACATCGAACCTCAAGAGGAATACCTGCGGATTCGTTTCCGCAA
AGATGGGGTGCTTCACCAAGCCTTTGATCCACTGCCGAAGAAAATCGTGCCAGCCGTCGTTTCCCGCTTCAAAATCTTGG
CTGACCTTGATATTGCTGAGCGGCGTGCCCCCCAAGATGGTCGTATCCGCAAAATGTTCCAAGGGCGACGGGTGGACTTC
CGAGTGAATACCCTCCCCAGCCGCTGGGGCGAAAAAGTCGTACTGCGGATTCTCGATAACTCCGCCACCCAACTCGGTCT
CGACAAGCTGATTACTGACCCTGAGAGCCTTGCTATTGTGCGGGAGATGACCAAGCGCCCCTTTGGCCTCATCCTCGTTA
CAGGTCCCACTGGTTCAGGGAAAACCACCACGCTTTACTCTGCGCTGGCTGAATGTAATAGTCCCGGTGTCAACATCAGT
ACAGCGGAAGACCCGATTGAATACACGCTCCCCGGCCTAACGCAGGTACAGGTTATTCGCGAAAAAGGCATGGACTTTGC
CTCAATTTTGCGAGCCTTTCTCCGCCAAGACCCCGATGTAATTCTGGTGGGCGAAACCCGTGACAAAGAAACCGCAAAAA
CCGCCATTGAAGCGGCTTTGACGGGGCACTTGGTCTTGACAACCCTGCACACTAACGATGCCCCCAGTGCAATTGCCCGC
CTCTCGGAAATGGGCATTGAACCCTTTATGGTTTCCGCCTCCCTCATTGGGGTTGTTGCCCAACGGCTGATGCGGCGGGT
ATGCAGTGAGTGTCGGATTCCCTATACACCCACCCGTGAGGAACTGGCGCGCTTTGGCTTGTCTGCCTCCAAGGATGTCA
ACCTCACCCTCTACAAAGCCAATAAACTGACACCCGAGCAAATTCAAGCGGCTAAGGCAACTGGCCAACCCATTTGCAAT
AAATGTGGTGGTTTGGGCTACAAAGGACGGGTCGGCGTCTACGAAATTATGCGGATCACCGAGCGACTGCAACGGCTGAT
TACCGAAGGTGCCCCCACCGAGCAAATCAAGGAGGCGGCCGTCGAAGAGGGCATGAAAACCCTGCTTGCCTATAGCTTGG
GGTTAGTCAAGGAAGGACTCACCACCCTCGAAGAAGTGGAGCGCGTCACCTTTACGGACACTGGACTAGAGGCAGAACTC
AAGGCCAAACGTAAGAGTTCTTTAACCTGCCGTACCTGCGGTGCCGAGGCGCAGCCCGAATGGTTAGAATGCCCCTATTG
CATGACACCCCGCTTTGTGGATTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilB/pilB1 | Synechocystis sp. PCC 6803 |
64.939 |
97.329 |
0.632 |
| pilB | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
38.776 |
94.51 |
0.366 |