Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   RHG98_RS01645 Genome accession   NZ_CP134166
Coordinates   353309..354700 (+) Length   463 a.a.
NCBI ID   WP_310744733.1    Uniprot ID   -
Organism   Thermosynechococcus sp. PP22     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 348309..359700
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHG98_RS01615 (RHG98_01615) - 349579..350229 (+) 651 WP_310744732.1 phosphorylase -
  RHG98_RS01620 (RHG98_01620) - 350258..351670 (+) 1413 WP_225901616.1 serine/threonine-protein kinase -
  RHG98_RS01625 (RHG98_01625) - 351636..352133 (-) 498 WP_206200793.1 GNAT family N-acetyltransferase -
  RHG98_RS01630 (RHG98_01630) secG 352145..352378 (-) 234 WP_149821094.1 preprotein translocase subunit SecG -
  RHG98_RS01635 (RHG98_01635) - 352488..352808 (+) 321 WP_149821092.1 phasin family protein -
  RHG98_RS01640 (RHG98_01640) - 352802..353290 (+) 489 WP_149821090.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  RHG98_RS01645 (RHG98_01645) radA 353309..354700 (+) 1392 WP_310744733.1 DNA repair protein RadA Machinery gene
  RHG98_RS01650 (RHG98_01650) cobU 354704..355270 (-) 567 WP_310744734.1 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase -
  RHG98_RS01655 (RHG98_01655) - 355287..356117 (-) 831 WP_206200796.1 ABC transporter permease -
  RHG98_RS01660 (RHG98_01660) argF 356125..357039 (-) 915 WP_206200797.1 ornithine carbamoyltransferase -
  RHG98_RS01665 (RHG98_01665) plsY 357181..357816 (-) 636 WP_206200798.1 glycerol-3-phosphate 1-O-acyltransferase PlsY -
  RHG98_RS01670 (RHG98_01670) - 357827..358795 (-) 969 WP_206200799.1 DUF3086 domain-containing protein -
  RHG98_RS01675 (RHG98_01675) - 358785..359189 (-) 405 WP_206200800.1 DUF3119 family protein -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 49563.15 Da        Isoelectric Point: 7.6433

>NTDB_id=878937 RHG98_RS01645 WP_310744733.1 353309..354700(+) (radA) [Thermosynechococcus sp. PP22]
MPKAKVLYICRECGAESVQYFGRCPNCGQWNTLDEQVVSPVETAARPTTPRKSTTPHPRSAKALGEISEQTQSRSASGFA
ELDRVLGGGIVVGSLVLVAGEPGIGKSTLLLQMAATLGQQQRVLYVCAEESAQQVKLRSQRLGIAASPSLYLLAETNLEV
ILQELTHLQPHLAIIDSIQAVYLPQLTAAPGSVSQVREGTAALMRLAKREQMSLFIVGHVTKEGAIAGPKVLEHLVDTVL
YFEGDRFASHRLVRAVKNRFGASQEIGVFEMGAQGLAEVTNPSALFLGDREPTPGTATIVACEGTRPLVVELQSLVSPTS
YPSPRRTATGIEYNRFLQILAVLEKRLGVPLSKLDAYVASAGGLNVAEPAADLGVAVAVVASFRDRWVHPQTVIIGEVGL
GGQVRAVSQLEVRLREALKLGFRRAIIPENQACAIAGLEIYPVRRVTDAIVAALAPMTTEESP

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=878937 RHG98_RS01645 WP_310744733.1 353309..354700(+) (radA) [Thermosynechococcus sp. PP22]
ATGCCCAAGGCCAAGGTACTGTACATCTGCCGCGAGTGTGGTGCCGAGTCTGTGCAATACTTTGGTCGCTGTCCCAACTG
TGGTCAGTGGAATACCCTTGATGAGCAGGTGGTTAGCCCTGTAGAGACCGCTGCTCGACCCACAACCCCCCGAAAATCGA
CCACTCCCCACCCCCGCAGTGCCAAGGCTCTAGGAGAGATTAGCGAACAGACACAGAGCCGTTCTGCCTCCGGATTTGCC
GAGTTGGATCGGGTTTTGGGAGGGGGGATTGTGGTTGGCTCCCTCGTGTTGGTGGCTGGCGAACCGGGAATTGGCAAGTC
CACGCTTTTGTTGCAGATGGCAGCCACCTTAGGGCAACAGCAGCGGGTGCTCTATGTCTGTGCTGAGGAATCGGCGCAGC
AGGTGAAATTGCGATCGCAACGCTTGGGCATTGCCGCCTCCCCCTCGCTCTATCTTTTGGCGGAGACGAATTTGGAGGTG
ATCCTGCAGGAGCTGACCCATCTGCAACCCCATCTGGCGATTATTGATAGCATCCAAGCGGTGTATCTGCCCCAATTGAC
GGCTGCCCCCGGCTCGGTGTCTCAGGTTCGTGAGGGCACAGCCGCCTTGATGCGCTTAGCCAAGCGGGAGCAGATGAGTC
TCTTTATTGTGGGGCATGTTACAAAGGAGGGGGCGATCGCCGGTCCGAAGGTGCTGGAACATTTGGTGGATACCGTGCTC
TACTTTGAGGGCGATCGCTTTGCCAGTCACCGCCTCGTACGCGCTGTCAAAAACCGCTTTGGTGCTAGTCAAGAAATTGG
CGTTTTTGAAATGGGCGCGCAGGGCTTAGCCGAGGTCACAAATCCTTCGGCGCTGTTTTTGGGCGATCGCGAGCCAACCC
CCGGTACCGCCACCATTGTGGCCTGTGAAGGCACCCGTCCGCTTGTGGTTGAGTTGCAAAGTTTAGTTAGCCCCACCAGT
TATCCCTCTCCACGCCGCACGGCCACGGGCATTGAGTACAATCGCTTTTTGCAAATTCTCGCCGTCCTAGAAAAACGCCT
AGGGGTGCCCCTCTCGAAGCTAGATGCCTATGTGGCGTCCGCTGGCGGGCTGAATGTGGCGGAACCCGCTGCTGATCTGG
GGGTGGCAGTGGCTGTTGTGGCTAGTTTTCGCGATCGCTGGGTGCACCCCCAAACGGTGATCATTGGCGAAGTGGGCTTA
GGGGGGCAAGTGCGAGCCGTCTCCCAGTTAGAAGTACGGCTGCGGGAGGCGCTGAAGTTGGGATTTCGCCGTGCCATTAT
TCCCGAAAACCAAGCCTGTGCGATCGCGGGGCTAGAGATTTATCCTGTACGTCGTGTCACCGATGCCATTGTGGCTGCCC
TTGCCCCTATGACCACTGAGGAATCCCCCTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(72-224)

Subunit ChlI of Mg-chelatase (ChlI)

(370-430)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.13

99.352

0.488
  radA Streptococcus pneumoniae Rx1

49.771

94.168

0.469
  radA Streptococcus pneumoniae D39

49.771

94.168

0.469
  radA Streptococcus pneumoniae R6

49.771

94.168

0.469
  radA Streptococcus pneumoniae TIGR4

49.771

94.168

0.469
  radA Streptococcus mitis NCTC 12261

49.771

94.168

0.469
  radA Streptococcus mitis SK321

49.771

94.168

0.469