Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   RIN70_RS01475 Genome accession   NZ_CP134147
Coordinates   257799..259778 (+) Length   659 a.a.
NCBI ID   WP_313790622.1    Uniprot ID   -
Organism   Streptococcus parasanguinis strain 30.8.10     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 252799..264778
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIN70_RS01465 (RIN70_01465) - 254903..255994 (+) 1092 WP_070594751.1 glycerol dehydrogenase -
  RIN70_RS01470 (RIN70_01470) - 256311..257633 (-) 1323 WP_080674710.1 DUF1958 domain-containing protein -
  RIN70_RS01475 (RIN70_01475) amiA3 257799..259778 (+) 1980 WP_313790622.1 peptide ABC transporter substrate-binding protein Regulator
  RIN70_RS01480 (RIN70_01480) leuS 259902..262403 (+) 2502 WP_195623504.1 leucine--tRNA ligase -
  RIN70_RS01485 (RIN70_01485) - 262799..263248 (+) 450 WP_070674725.1 MarR family winged helix-turn-helix transcriptional regulator -
  RIN70_RS01490 (RIN70_01490) - 263267..264121 (+) 855 WP_070674728.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 659 a.a.        Molecular weight: 72883.85 Da        Isoelectric Point: 5.2004

>NTDB_id=878846 RIN70_RS01475 WP_313790622.1 257799..259778(+) (amiA3) [Streptococcus parasanguinis strain 30.8.10]
MNKGKVLLATSALLLSAGVLAACSGGKSSSSGGQTFSYVYTQDPDTLDYSISNKKSTSEFTGNAIDGLLEVDKYGNLIPS
LAKDWTVSKDGLTYTYKLRKGVKWMTSEGEEYGGEVKAQDFVTGLKHAADKKSQAIYLVQKSVKGLDDYVSGKTSDFSTV
GVKAIDDYTVQYTLSQPESFWNSKTTMGILMPVNEEFLKSKGDDYGQGTSPSSILYCGPYLIKSITSKSSAILEKNPTYW
DADNVKISKVKLTYYDGQDSESLIRGFDNGDYTVARVFPNGSNYKSVEKKHKDDIVYTDQGSSTYNLSFNIDRQAYEITK
KTTDAQKTSTKKAILNKDFRQAIMFAFNRKAYVAQTNGEAGANKVIRNTFTPPNFVQIDGKQFGDAVEKDLEAYGDEWKG
VSVADGKDTLYNPTKAKEEFAKAKADLQAQGVEFPIHLDLPTSSTYTEGIKQAQSFKQSVESTLGAENIVIDLNMISEDD
LQRVTYFAESASQQDWDLNNNLGWGPDYTDPSSYIDITSGKSGENANSYFGFDAGTDNAAAKAAGFDEYDQLIEDAHNET
KDVNKRYEKYAAAQAWLTDSALLIPIHSDGASPVVRKTVPYSAAFAWTGHKGQSFNYKYLEVQDKVVSAKDYDKARDQWK
KEKEKSNKKAQEELEKHVK

Nucleotide


Download         Length: 1980 bp        

>NTDB_id=878846 RIN70_RS01475 WP_313790622.1 257799..259778(+) (amiA3) [Streptococcus parasanguinis strain 30.8.10]
ATGAACAAAGGGAAGGTACTCTTAGCTACCAGCGCTCTGCTTTTATCAGCTGGTGTACTGGCAGCCTGCTCAGGAGGGAA
ATCTAGTAGCTCTGGTGGTCAGACATTTAGCTATGTCTATACCCAGGATCCGGATACCTTAGACTACTCGATTTCCAATA
AAAAATCGACTTCCGAGTTTACAGGAAATGCGATAGATGGCTTGTTGGAAGTGGACAAGTACGGGAACTTGATCCCATCG
CTTGCTAAAGACTGGACTGTTTCCAAGGATGGCTTGACCTATACTTATAAACTCCGTAAAGGGGTCAAATGGATGACTTC
TGAAGGGGAAGAATATGGAGGAGAGGTTAAGGCCCAAGACTTTGTGACAGGTCTCAAACACGCGGCAGATAAGAAATCAC
AAGCGATTTACTTGGTCCAAAAATCTGTCAAAGGTTTGGATGATTATGTTTCAGGGAAGACATCTGATTTCTCAACTGTT
GGTGTGAAAGCTATTGACGATTACACCGTTCAATATACCTTGAGCCAACCAGAAAGTTTCTGGAATTCCAAGACTACGAT
GGGGATCTTGATGCCGGTCAATGAAGAATTCCTGAAATCTAAAGGAGATGACTATGGTCAAGGAACTTCTCCATCTAGTA
TCCTCTACTGCGGTCCTTATTTGATCAAATCTATCACTTCTAAATCTTCTGCGATATTGGAAAAGAACCCAACATACTGG
GATGCGGATAATGTTAAGATCAGTAAAGTCAAGCTGACCTATTATGATGGACAAGACTCAGAATCCTTGATTCGTGGGTT
TGATAACGGCGACTATACAGTTGCCCGTGTTTTCCCAAATGGTTCTAACTATAAGAGTGTAGAGAAGAAGCATAAGGACG
ACATTGTCTATACTGACCAAGGTTCCTCTACCTACAATCTTTCCTTCAACATTGACCGTCAGGCTTATGAAATCACAAAG
AAGACCACGGATGCTCAAAAGACTTCAACTAAGAAAGCAATCTTAAATAAAGACTTCCGTCAAGCCATTATGTTTGCCTT
CAACCGCAAGGCTTATGTAGCGCAAACTAACGGGGAAGCGGGTGCCAATAAGGTGATCCGTAATACCTTTACGCCACCAA
ACTTTGTCCAAATCGATGGCAAACAATTTGGTGATGCAGTAGAAAAAGACTTAGAAGCTTATGGGGATGAATGGAAAGGG
GTCTCTGTCGCAGATGGAAAAGACACCCTCTACAATCCAACCAAGGCCAAAGAAGAGTTTGCCAAAGCCAAGGCAGATTT
GCAGGCTCAAGGAGTTGAATTCCCAATTCATTTAGACCTTCCAACTTCTTCAACTTATACAGAAGGGATCAAACAAGCTC
AATCCTTTAAACAGTCAGTTGAATCTACACTAGGAGCAGAAAATATTGTCATCGATTTGAATATGATTTCTGAAGATGAT
CTGCAACGGGTTACCTACTTTGCTGAAAGTGCTTCGCAACAAGACTGGGATTTGAACAATAACTTGGGTTGGGGACCAGA
CTATACGGACCCATCTTCTTACATCGATATCACTAGTGGTAAATCCGGCGAAAACGCCAATTCTTACTTTGGATTCGATG
CTGGTACGGATAATGCAGCCGCAAAAGCAGCTGGTTTTGATGAATATGATCAATTGATCGAAGATGCGCACAATGAAACC
AAAGATGTGAACAAGCGTTACGAAAAATATGCTGCCGCTCAAGCTTGGTTGACCGATAGTGCCCTCTTGATTCCGATTCA
TTCGGATGGAGCTTCTCCAGTCGTTCGTAAGACTGTACCATACTCTGCAGCCTTTGCTTGGACAGGCCACAAGGGTCAAT
CCTTCAACTATAAATATTTAGAAGTTCAAGACAAGGTCGTATCGGCTAAAGACTACGACAAAGCGCGTGATCAATGGAAG
AAAGAAAAAGAAAAATCCAATAAAAAAGCGCAAGAAGAACTTGAAAAGCATGTGAAATAG

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(77-524)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

56.127

100

0.563
  amiA3 Streptococcus thermophilus LMG 18311

55.825

100

0.56
  amiA Streptococcus salivarius strain HSISS4

55.758

100

0.558