Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   RI108_RS20505 Genome accession   NZ_CP134081
Coordinates   4553493..4553882 (-) Length   129 a.a.
NCBI ID   WP_049861706.1    Uniprot ID   A0AAJ6LZS0
Organism   Pseudomonas coleopterorum strain DJ13     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 4548493..4558882
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RI108_RS20490 (RI108_20490) - 4550408..4552465 (-) 2058 WP_049861708.1 methyl-accepting chemotaxis protein -
  RI108_RS20495 (RI108_20495) - 4552524..4553063 (-) 540 WP_310791891.1 chemotaxis protein CheW -
  RI108_RS20500 (RI108_20500) pilH 4553073..4553438 (-) 366 WP_310791892.1 twitching motility response regulator PilH -
  RI108_RS20505 (RI108_20505) pilG 4553493..4553882 (-) 390 WP_049861706.1 response regulator transcription factor Regulator
  RI108_RS20510 (RI108_20510) gshB 4554102..4555055 (+) 954 WP_049861705.1 glutathione synthase -
  RI108_RS20515 (RI108_20515) - 4555145..4556050 (+) 906 WP_310791893.1 energy transducer TonB -
  RI108_RS20520 (RI108_20520) - 4556112..4556681 (+) 570 WP_049861703.1 YqgE/AlgH family protein -
  RI108_RS20525 (RI108_20525) ruvX 4556681..4557121 (+) 441 WP_090355605.1 Holliday junction resolvase RuvX -
  RI108_RS20530 (RI108_20530) pyrR 4557303..4557821 (+) 519 WP_310791894.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  RI108_RS20535 (RI108_20535) - 4557833..4558837 (+) 1005 WP_310791895.1 aspartate carbamoyltransferase catalytic subunit -

Sequence

Protein


Download         Length: 129 a.a.        Molecular weight: 14126.43 Da        Isoelectric Point: 5.1492

>NTDB_id=878760 RI108_RS20505 WP_049861706.1 4553493..4553882(-) (pilG) [Pseudomonas coleopterorum strain DJ13]
MKTPDAFKIMVIDDSKTIRRTAELLLEQAGCQVITALDGFDALAKIVDERPDIIFIDVMMPRLDGYQTCTLLKSNSDFSA
IPVVMLSSRDGLFDKACGRTAGSDQFLTKPFSKQELLAAIRAHVPGFAA

Nucleotide


Download         Length: 390 bp        

>NTDB_id=878760 RI108_RS20505 WP_049861706.1 4553493..4553882(-) (pilG) [Pseudomonas coleopterorum strain DJ13]
ATGAAAACGCCTGACGCCTTCAAGATCATGGTGATCGACGACTCCAAGACGATTCGTCGCACCGCCGAGCTGTTGCTCGA
ACAGGCAGGCTGCCAGGTGATCACGGCCCTCGATGGTTTCGACGCCCTGGCCAAGATCGTCGACGAGCGTCCCGATATCA
TCTTCATCGATGTCATGATGCCGCGCCTGGATGGCTACCAGACCTGCACGCTGCTCAAGAGCAACAGTGACTTCAGTGCG
ATTCCGGTCGTGATGTTGTCGTCGCGTGATGGCCTGTTCGACAAGGCCTGCGGCCGCACCGCAGGCTCGGATCAATTTCT
GACCAAGCCTTTCAGCAAGCAAGAACTGCTCGCCGCGATCCGTGCCCATGTGCCGGGTTTCGCCGCGTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(9-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

68.293

95.349

0.651
  vicR Streptococcus mutans UA159

42.735

90.698

0.388