Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   RI106_RS13385 Genome accession   NZ_CP134071
Coordinates   2736016..2736732 (-) Length   238 a.a.
NCBI ID   WP_000688498.1    Uniprot ID   Q2VG52
Organism   Staphylococcus aureus strain 4233     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2731016..2741732
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RI106_RS13365 (RI106_13365) - 2732108..2733058 (+) 951 WP_000790329.1 LacI family DNA-binding transcriptional regulator -
  RI106_RS13370 (RI106_13370) - 2733207..2734691 (+) 1485 WP_000141427.1 sucrose-6-phosphate hydrolase -
  RI106_RS13375 (RI106_13375) - 2734688..2735647 (+) 960 WP_001253302.1 carbohydrate kinase -
  RI106_RS13380 (RI106_13380) - 2735835..2735944 (-) 110 Protein_2591 hypothetical protein -
  RI106_RS13385 (RI106_13385) agrA 2736016..2736732 (-) 717 WP_000688498.1 quorum-sensing response regulator AgrA Regulator
  RI106_RS13390 (RI106_13390) agrC 2736751..2738043 (-) 1293 WP_001657119.1 quorum-sensing sensor histidine kinase AgrC -
  RI106_RS13395 (RI106_13395) agrD 2738068..2738208 (-) 141 WP_001093929.1 cyclic lactone autoinducer peptide AgrD -
  RI106_RS13400 (RI106_13400) agrB 2738205..2738774 (-) 570 WP_001105707.1 accessory gene regulator AgrB -
  RI106_RS13835 hld 2739064..2739144 (+) 81 WP_000046022.1 delta-hemolysin -
  RI106_RS13410 (RI106_13410) - 2739721..2740530 (-) 810 WP_064132125.1 carbon-nitrogen family hydrolase -
  RI106_RS13415 (RI106_13415) - 2740891..2741517 (-) 627 WP_000522384.1 nitroreductase family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27933.91 Da        Isoelectric Point: 6.0927

>NTDB_id=878701 RI106_RS13385 WP_000688498.1 2736016..2736732(-) (agrA) [Staphylococcus aureus strain 4233]
MKIFICEDDPKQRENMVTIIKNYIMIEEKPMEIALATDNPYEVLEQAKNMNDIGCYFLDIQLSTDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPAELRTRIIDCLETAHTRLQLLSRDNSVETIELKRGSNSVYVQYDDIM
FFESSTKSHRLIAHLDNRQIEFYGNLKELSQLDDRFFRCHNSFVVNRHNIESIDSKERIVYFKNKEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=878701 RI106_RS13385 WP_000688498.1 2736016..2736732(-) (agrA) [Staphylococcus aureus strain 4233]
ATGAAAATTTTCATTTGCGAAGACGATCCAAAACAAAGAGAAAACATGGTTACCATTATTAAAAATTATATAATGATAGA
AGAAAAGCCTATGGAAATTGCCCTCGCAACTGATAATCCTTATGAGGTGCTTGAGCAAGCTAAAAATATGAATGACATAG
GCTGTTACTTTTTAGATATTCAACTTTCAACTGATATTAATGGTATCAAATTAGGCAGTGAAATTCGTAAGCATGACCCA
GTTGGTAACATTATTTTCGTTACGAGTCACAGTGAACTTACCTATTTAACATTTGTCTACAAAGTTGCAGCGATGGATTT
TATTTTTAAAGATGATCCAGCAGAATTAAGAACTCGAATTATAGATTGTTTAGAAACTGCACATACACGCTTACAATTAT
TATCAAGAGATAATAGCGTTGAAACGATTGAATTAAAACGTGGCAGTAATTCAGTGTATGTTCAATATGATGATATTATG
TTTTTTGAATCATCAACAAAATCGCACAGACTCATTGCCCATTTAGATAACCGTCAAATTGAATTTTATGGTAATTTAAA
AGAACTGAGTCAATTAGATGATCGTTTCTTTAGATGTCATAATAGCTTTGTCGTCAATCGCCATAATATTGAATCTATAG
ATTCGAAAGAGCGAATTGTCTATTTTAAAAATAAAGAACACTGCTATGCATCGGTGAGAAACGTTAAAAAAATATAA

Domains

Predicted by InterproScan.

LytTr DNA-binding domain (LytTR)

(151-237)

Response regulator receiver domain (Response_reg)

(3-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2VG52

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

99.58

100

0.996