Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   OCX16_RS08050 Genome accession   NZ_AP024730
Coordinates   1648218..1648664 (-) Length   148 a.a.
NCBI ID   WP_001788899.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 59574     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1643218..1653664
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCX16_RS08020 gcvPA 1644144..1645490 (-) 1347 WP_117200971.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  OCX16_RS08025 gcvT 1645510..1646601 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  OCX16_RS08030 - 1646760..1647284 (-) 525 WP_261921117.1 shikimate kinase -
  OCX16_RS08035 - 1647274..1647420 (-) 147 WP_001789879.1 hypothetical protein -
  OCX16_RS08040 comGF 1647517..1648014 (-) 498 WP_001789864.1 competence type IV pilus minor pilin ComGF Machinery gene
  OCX16_RS08045 comGE 1647932..1648231 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  OCX16_RS08050 comGD 1648218..1648664 (-) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  OCX16_RS08055 comGC 1648642..1648953 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  OCX16_RS08060 comGB 1648967..1650037 (-) 1071 WP_000776422.1 competence type IV pilus assembly protein ComGB Machinery gene
  OCX16_RS08065 comGA 1650009..1650983 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  OCX16_RS08070 - 1651035..1651658 (-) 624 WP_001223010.1 MBL fold metallo-hydrolase -
  OCX16_RS08075 - 1651655..1651984 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  OCX16_RS08080 - 1651984..1652970 (-) 987 WP_000161314.1 ROK family glucokinase -
  OCX16_RS08085 - 1652967..1653170 (-) 204 WP_000087561.1 YqgQ family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17165.33 Da        Isoelectric Point: 10.3312

>NTDB_id=87863 OCX16_RS08050 WP_001788899.1 1648218..1648664(-) (comGD) [Staphylococcus aureus strain 59574]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISFITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=87863 OCX16_RS08050 WP_001788899.1 1648218..1648664(-) (comGD) [Staphylococcus aureus strain 59574]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTCTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTTTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

100

100

1
  comGD Staphylococcus aureus N315

100

100

1

Multiple sequence alignment