Detailed information
Bioinformatically predicted
Overview
| Name | comGE | Type | Machinery gene |
| Locus tag | RIF20_RS05905 | Genome accession | NZ_CP134068 |
| Coordinates | 1154362..1154661 (+) | Length | 99 a.a. |
| NCBI ID | WP_000844413.1 | Uniprot ID | X5E258 |
| Organism | Staphylococcus aureus strain 63 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 1149362..1159661
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RIF20_RS05880 (RIF20_05880) | - | 1149939..1151585 (+) | 1647 | WP_000277718.1 | IS1182 family transposase | - |
| RIF20_RS05885 (RIF20_05885) | comGA | 1151610..1152584 (+) | 975 | Protein_1122 | competence type IV pilus ATPase ComGA | - |
| RIF20_RS05890 (RIF20_05890) | comGB | 1152556..1153626 (+) | 1071 | WP_000776422.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| RIF20_RS05895 (RIF20_05895) | comGC | 1153640..1153951 (+) | 312 | WP_000472256.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| RIF20_RS05900 (RIF20_05900) | comGD | 1153929..1154375 (+) | 447 | WP_001788899.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| RIF20_RS05905 (RIF20_05905) | comGE | 1154362..1154661 (+) | 300 | WP_000844413.1 | hypothetical protein | Machinery gene |
| RIF20_RS05910 (RIF20_05910) | comGF | 1154579..1155076 (+) | 498 | WP_029642894.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| RIF20_RS05915 (RIF20_05915) | - | 1155173..1155319 (+) | 147 | WP_001789879.1 | hypothetical protein | - |
| RIF20_RS05920 (RIF20_05920) | - | 1155309..1155833 (+) | 525 | WP_001015123.1 | shikimate kinase | - |
| RIF20_RS05925 (RIF20_05925) | gcvT | 1155992..1157083 (+) | 1092 | WP_000093348.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| RIF20_RS05930 (RIF20_05930) | gcvPA | 1157103..1158449 (+) | 1347 | WP_000019689.1 | aminomethyl-transferring glycine dehydrogenase subunit GcvPA | - |
Sequence
Protein
Download Length: 99 a.a. Molecular weight: 11093.20 Da Isoelectric Point: 9.9215
>NTDB_id=878617 RIF20_RS05905 WP_000844413.1 1154362..1154661(+) (comGE) [Staphylococcus aureus strain 63]
MKSYKCKGSFLIDSMAGFLLIGLITLLLIPMMNQMQASINHKLQTIDASKVILTTVSKINKEELKKGVTIGKYDIKQSDQ
QICAISKNTTSYQKTCIQY
MKSYKCKGSFLIDSMAGFLLIGLITLLLIPMMNQMQASINHKLQTIDASKVILTTVSKINKEELKKGVTIGKYDIKQSDQ
QICAISKNTTSYQKTCIQY
Nucleotide
Download Length: 300 bp
>NTDB_id=878617 RIF20_RS05905 WP_000844413.1 1154362..1154661(+) (comGE) [Staphylococcus aureus strain 63]
ATGAAAAGCTATAAGTGTAAAGGATCATTCTTAATAGATAGTATGGCTGGATTTTTGCTAATTGGATTGATTACATTACT
ATTGATACCAATGATGAATCAAATGCAAGCGAGTATAAACCATAAACTACAAACAATTGATGCTTCTAAAGTAATTTTGA
CGACTGTATCTAAAATTAATAAAGAAGAACTTAAGAAGGGGGTAACTATAGGGAAGTATGATATTAAGCAAAGTGACCAA
CAAATTTGTGCTATTTCAAAAAATACCACTTCTTATCAAAAGACATGTATACAGTATTAA
ATGAAAAGCTATAAGTGTAAAGGATCATTCTTAATAGATAGTATGGCTGGATTTTTGCTAATTGGATTGATTACATTACT
ATTGATACCAATGATGAATCAAATGCAAGCGAGTATAAACCATAAACTACAAACAATTGATGCTTCTAAAGTAATTTTGA
CGACTGTATCTAAAATTAATAAAGAAGAACTTAAGAAGGGGGTAACTATAGGGAAGTATGATATTAAGCAAAGTGACCAA
CAAATTTGTGCTATTTCAAAAAATACCACTTCTTATCAAAAGACATGTATACAGTATTAA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGE | Staphylococcus aureus MW2 |
86.842 |
100 |
1 |
| comGE | Staphylococcus aureus N315 |
98.99 |
100 |
0.99 |