Detailed information NTG0878536

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: RI633_RS11710
• Genome accession: NZ_CP134060
• Coordinates: 2600034..2601041 (-)
• Length: 335 a.a.
• NCBI ID: WP_000116737.1
• Uniprot ID: O51804
• Organism: Vibrio cholerae strain CMUL 009
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2595034..2606041

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RI633_RS11700 (RI633_11700)	cysM	2596198..2597085 (+)	888	WP_001279365.1	cysteine synthase CysM	-
RI633_RS11705 (RI633_11705)	mutS	2597353..2599941 (+)	2589	WP_001894770.1	DNA mismatch repair protein MutS	-
RI633_RS11710 (RI633_11710)	rpoS	2600034..2601041 (-)	1008	WP_000116737.1	RNA polymerase sigma factor RpoS	Regulator
RI633_RS11715 (RI633_11715)	nlpD	2601115..2602050 (-)	936	WP_000177568.1	murein hydrolase activator NlpD	-
RI633_RS11720 (RI633_11720)	-	2602050..2602676 (-)	627	WP_000002982.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
RI633_RS11725 (RI633_11725)	surE	2602669..2603421 (-)	753	WP_000698379.1	5'/3'-nucleotidase SurE	-
RI633_RS11730 (RI633_11730)	truD	2603423..2604508 (-)	1086	WP_000129752.1	tRNA pseudouridine(13) synthase TruD	-
RI633_RS11735 (RI633_11735)	ispF	2604538..2605014 (-)	477	WP_000619209.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
RI633_RS11740 (RI633_11740)	ispD	2605011..2605709 (-)	699	WP_001061951.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
RI633_RS11745 (RI633_11745)	ftsB	2605706..2605990 (-)	285	WP_001263189.1	cell division protein FtsB	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 38534.39 Da
• Isoelectric Point: 4.3648

>NTDB_id=878536 RI633_RS11710 WP_000116737.1 2600034..2601041(-) (rpoS) [Vibrio cholerae strain CMUL 009]
MSVSNTVTKVEEFDFEDEALEVLETDAELTSDEELVAVEGASEDVREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLY
ARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALM
NQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILP
DSHNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVK
QGLNMEALFNVEYDN

Nucleotide

• Length: 1008 bp

>NTDB_id=878536 RI633_RS11710 WP_000116737.1 2600034..2601041(-) (rpoS) [Vibrio cholerae strain CMUL 009]
ATGAGTGTCAGCAATACCGTAACCAAAGTAGAAGAGTTCGATTTTGAAGATGAAGCACTGGAAGTGCTAGAAACTGATGC
CGAGCTCACCAGTGATGAAGAATTAGTTGCTGTTGAAGGGGCAAGTGAAGACGTTCGTGAAGAGTTTGATGCTTCTGCGA
AAAGTCTTGATGCGACCCAGATGTATCTCAGCGAAATTGGTTTTTCACCGCTCCTTACTGCCGAAGAAGAAGTGCTTTAT
GCTCGTCGTGCCTTACGTGGTGATGAAGCCGCACGTAAACGCATGATTGAAAGTAACTTGCGTCTGGTGGTAAAAATTTC
ACGCCGTTACAGCAACCGAGGATTAGCACTGCTCGATCTGATTGAAGAAGGTAATCTTGGTCTGATCCGTGCGGTTGAGA
AATTCGATCCAGAACGCGGTTTCCGCTTCTCTACCTACGCAACATGGTGGATCCGTCAAACCATTGAACGTGCGCTGATG
AACCAAACACGCACCATTCGTCTACCGATTCATGTCGTCAAAGAGCTGAACATTTATTTGCGTACTGCTCGCGAATTATC
ACAGCGCCTTGACCACGAACCTACACCAGAAGAAATTGCTCTTGAGTTAGACCGACCTGTCGATGATGTCACTAAGATGC
TGCGTCTTAACGAACGGATCAGCTCAGTGGATACGCCAATTGGTGGGGATGGAGATAAGGCACTGCTGGATATTTTGCCA
GACTCTCACAATGCCGATCCTGAGTTTTCAACTCAAGATGATGACATTCGTGAATCGCTGCTCAACTGGTTGGATGAACT
TAATCCAAAGCAAAAAGAAGTGCTTGCGCGTCGCTTTGGGCTTCTTGGCTATGAACCATCGACCTTGGAAGAAGTGGGTC
GTGAGATCAATCTCACTCGTGAGCGTGTTCGCCAAATCCAAGTGGAAGGTCTACGTCGTCTGCGTGAGATTTTGGTGAAA
CAAGGTTTGAATATGGAAGCGCTGTTTAACGTCGAATACGACAACTAA

Domains

Predicted by InterproScan.

• Sigma-70, region 4 (Sigma70_r4) (263-316)

• Sigma-70 region 3 (Sigma70_r3) (175-249)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (57-90)

• Sigma-70 region 2 (Sigma70_r2) (95-164)

3D structure

• AlphaFold DB: O51804

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	100	100	1