Detailed information NTG0087852

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: AABJ98_RS15650
• Genome accession: NZ_AP027599
• Coordinates: 3171286..3172311 (-)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli strain LR-71-1
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 3166286..3177311

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AABJ98_RS15620 (VEE28_30290)	zapB	3166370..3166615 (+)	246	WP_001296623.1	septal ring assembly protein ZapB	-
AABJ98_RS15625 (VEE28_30300)	rraA	3166700..3167185 (-)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
AABJ98_RS15630 (VEE28_30310)	menA	3167278..3168204 (-)	927	WP_000139496.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
AABJ98_RS15635 (VEE28_30320)	hslU	3168271..3169602 (-)	1332	WP_279455530.1	HslU--HslV peptidase ATPase subunit	-
AABJ98_RS15640 (VEE28_30330)	hslV	3169612..3170142 (-)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
AABJ98_RS15645 (VEE28_30340)	ftsN	3170235..3171194 (-)	960	WP_000068828.1	cell division protein FtsN	-
AABJ98_RS15650 (VEE28_30350)	cytR	3171286..3172311 (-)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
AABJ98_RS15655 (VEE28_30360)	priA	3172467..3174665 (-)	2199	WP_001355569.1	primosomal protein N'	Machinery gene
AABJ98_RS15660 (VEE28_30370)	rpmE	3174868..3175080 (+)	213	WP_000710769.1	50S ribosomal protein L31	-
AABJ98_RS15665 (VEE28_30380)	yiiX	3175141..3175749 (-)	609	WP_000797353.1	YiiX family permuted papain-like enzyme	-
AABJ98_RS15670 (VEE28_30390)	metJ	3175933..3176250 (-)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=87852 AABJ98_RS15650 WP_000644904.1 3171286..3172311(-) (cytR) [Escherichia coli strain LR-71-1]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=87852 AABJ98_RS15650 WP_000644904.1 3171286..3172311(-) (cytR) [Escherichia coli strain LR-71-1]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACCGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAGCTGGAG
CTGCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628