Detailed information NTG0878482

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: RI644_RS09410
• Genome accession: NZ_CP134058
• Coordinates: 944382..945389 (+)
• Length: 335 a.a.
• NCBI ID: WP_000116737.1
• Uniprot ID: O51804
• Organism: Vibrio cholerae strain VIC11-A
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 939382..950389

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RI644_RS09375 (RI644_09375)	ftsB	939433..939717 (+)	285	WP_001263189.1	cell division protein FtsB	-
RI644_RS09380 (RI644_09380)	ispD	939714..940412 (+)	699	WP_001061951.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
RI644_RS09385 (RI644_09385)	ispF	940409..940885 (+)	477	WP_000619209.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
RI644_RS09390 (RI644_09390)	truD	940915..942000 (+)	1086	WP_000129752.1	tRNA pseudouridine(13) synthase TruD	-
RI644_RS09395 (RI644_09395)	surE	942002..942754 (+)	753	WP_000698379.1	5'/3'-nucleotidase SurE	-
RI644_RS09400 (RI644_09400)	-	942747..943373 (+)	627	WP_000002982.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
RI644_RS09405 (RI644_09405)	nlpD	943373..944308 (+)	936	WP_000177568.1	murein hydrolase activator NlpD	-
RI644_RS09410 (RI644_09410)	rpoS	944382..945389 (+)	1008	WP_000116737.1	RNA polymerase sigma factor RpoS	Regulator
RI644_RS09415 (RI644_09415)	mutS	945482..948070 (-)	2589	WP_001894770.1	DNA mismatch repair protein MutS	-
RI644_RS09420 (RI644_09420)	cysM	948338..949225 (-)	888	WP_001279365.1	cysteine synthase CysM	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 38534.39 Da
• Isoelectric Point: 4.3648

>NTDB_id=878482 RI644_RS09410 WP_000116737.1 944382..945389(+) (rpoS) [Vibrio cholerae strain VIC11-A]
MSVSNTVTKVEEFDFEDEALEVLETDAELTSDEELVAVEGASEDVREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLY
ARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALM
NQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILP
DSHNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVK
QGLNMEALFNVEYDN

Nucleotide

• Length: 1008 bp

>NTDB_id=878482 RI644_RS09410 WP_000116737.1 944382..945389(+) (rpoS) [Vibrio cholerae strain VIC11-A]
ATGAGTGTCAGCAATACCGTAACCAAAGTAGAAGAGTTCGATTTTGAAGATGAAGCACTGGAAGTGCTAGAAACTGATGC
CGAGCTCACCAGTGATGAAGAATTAGTTGCTGTTGAAGGGGCAAGTGAAGACGTTCGTGAAGAGTTTGATGCTTCTGCGA
AAAGTCTTGATGCGACCCAGATGTATCTCAGCGAAATTGGTTTTTCACCGCTCCTTACTGCCGAAGAAGAAGTGCTTTAT
GCTCGTCGTGCCTTACGTGGTGATGAAGCCGCACGTAAACGCATGATTGAAAGTAACTTGCGTCTGGTGGTAAAAATTTC
ACGCCGTTACAGCAACCGAGGATTAGCACTGCTCGATCTGATTGAAGAAGGTAATCTTGGTCTGATCCGTGCGGTTGAGA
AATTCGATCCAGAACGCGGTTTCCGCTTCTCTACCTACGCAACATGGTGGATCCGTCAAACCATTGAACGTGCGCTGATG
AACCAAACACGCACCATTCGTCTACCGATTCATGTCGTCAAAGAGCTGAACATTTATTTGCGTACTGCTCGCGAATTATC
ACAGCGCCTTGACCACGAACCTACACCAGAAGAAATTGCTCTTGAGTTAGACCGACCTGTCGATGATGTCACTAAGATGC
TGCGTCTTAACGAACGGATCAGCTCAGTGGATACGCCAATTGGTGGGGATGGAGATAAGGCACTGCTGGATATTTTGCCA
GACTCTCACAATGCCGATCCTGAGTTTTCAACTCAAGATGATGACATTCGTGAATCGCTGCTCAACTGGTTGGATGAACT
TAATCCAAAGCAAAAAGAAGTGCTTGCGCGTCGCTTTGGGCTTCTTGGCTATGAACCATCGACCTTGGAAGAAGTGGGTC
GTGAGATCAATCTCACTCGTGAGCGTGTTCGCCAAATCCAAGTGGAAGGTCTACGTCGTCTGCGTGAGATTTTGGTGAAA
CAAGGTTTGAATATGGAAGCGCTGTTTAACGTCGAATACGACAACTAA

Domains

Predicted by InterproScan.

• Sigma-70, region 4 (Sigma70_r4) (263-316)

• Sigma-70 region 3 (Sigma70_r3) (175-249)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (57-90)

• Sigma-70 region 2 (Sigma70_r2) (95-164)

3D structure

• AlphaFold DB: O51804

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	100	100	1