Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   RGB73_RS29455 Genome accession   NZ_CP134050
Coordinates   5998745..5999698 (-) Length   317 a.a.
NCBI ID   WP_310767354.1    Uniprot ID   -
Organism   Brevibacillus brevis strain NEB573     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5993745..6004698
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RGB73_RS29430 (RGB73_29430) - 5995039..5995482 (+) 444 WP_310767340.1 hypothetical protein -
  RGB73_RS29435 (RGB73_29435) - 5995470..5995769 (+) 300 WP_310767342.1 YxcD family protein -
  RGB73_RS29440 (RGB73_29440) - 5995957..5996937 (-) 981 WP_310767345.1 siderophore ABC transporter substrate-binding protein -
  RGB73_RS29445 (RGB73_29445) - 5997052..5997810 (-) 759 WP_310767348.1 ABC transporter ATP-binding protein -
  RGB73_RS29450 (RGB73_29450) - 5997804..5998748 (-) 945 WP_310767351.1 iron chelate uptake ABC transporter family permease subunit -
  RGB73_RS29455 (RGB73_29455) ceuB 5998745..5999698 (-) 954 WP_310767354.1 ABC transporter permease Machinery gene
  RGB73_RS29460 (RGB73_29460) istB 5999989..6000717 (-) 729 WP_023555238.1 IS21-like element helper ATPase IstB -
  RGB73_RS29465 (RGB73_29465) istA 6000714..6002219 (-) 1506 WP_024985199.1 IS21 family transposase -
  RGB73_RS29470 (RGB73_29470) - 6002366..6002533 (+) 168 Protein_5728 ABC transporter ATP-binding protein -
  RGB73_RS29475 (RGB73_29475) - 6002604..6004019 (-) 1416 WP_310767357.1 MATE family efflux transporter -
  RGB73_RS29480 (RGB73_29480) - 6004254..6004613 (+) 360 WP_310767359.1 response regulator -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35144.62 Da        Isoelectric Point: 9.8385

>NTDB_id=878434 RGB73_RS29455 WP_310767354.1 5998745..5999698(-) (ceuB) [Brevibacillus brevis strain NEB573]
MKKRYLVVALILLSIASLFIGVKDISPLELFNLTEEKTQIMWIARIPRLISIIIAGISMSIVGLIMQQLTRNKFVSPTTA
GTEDSVRFGILVSMMLFANANPLLKMLVAFVFALLGTFVFMKILDRIKFKDSIFIPLVGLMFGNIVGSITTFFAYKYDLI
QNMSSWLHGDFSSVMKGSYELLYVSIPLVIIAYLFANKFTIAGMGEEFAINLGLNYKQVVNIGLCIVAMVTSVVILTVGT
IPFLGLIIPNIVTLYLGDNLKKSLSHTALLGAVFVLCCDILGRLIIFPYEISIGLMVGVIGSGMFIFLLMRRKAYDR

Nucleotide


Download         Length: 954 bp        

>NTDB_id=878434 RGB73_RS29455 WP_310767354.1 5998745..5999698(-) (ceuB) [Brevibacillus brevis strain NEB573]
ATGAAGAAGAGATATTTGGTTGTGGCACTCATCCTGCTGTCGATAGCTTCCTTGTTTATCGGTGTGAAGGACATTTCTCC
ACTGGAACTGTTCAATCTCACGGAAGAAAAGACGCAGATCATGTGGATCGCCAGAATCCCTCGGTTGATCAGTATCATCA
TAGCGGGAATCAGCATGAGCATCGTGGGCTTGATCATGCAGCAGCTCACGCGCAACAAGTTCGTGTCGCCCACGACAGCA
GGTACGGAGGATTCGGTGCGGTTCGGCATCCTGGTCTCCATGATGCTGTTTGCGAATGCGAACCCGCTGTTGAAAATGCT
CGTGGCGTTCGTTTTTGCATTGTTGGGAACGTTCGTGTTTATGAAAATTCTCGACAGGATCAAGTTCAAGGATTCCATCT
TCATTCCGCTGGTGGGTTTGATGTTCGGGAATATCGTCGGTTCCATCACGACGTTTTTCGCTTATAAATACGATCTCATC
CAAAACATGTCTTCGTGGCTGCATGGCGATTTTTCTTCCGTCATGAAAGGGAGCTATGAACTTCTGTACGTCAGCATCCC
GCTGGTAATCATCGCTTATCTGTTCGCCAACAAGTTCACCATTGCCGGGATGGGCGAGGAATTCGCCATCAACCTGGGGC
TGAATTACAAGCAGGTCGTGAATATCGGGCTTTGCATTGTGGCGATGGTCACTTCCGTGGTGATCCTGACGGTCGGAACC
ATTCCCTTTTTAGGGTTGATCATTCCCAATATCGTGACGCTGTACCTGGGGGATAACCTGAAAAAGAGCCTGTCTCACAC
GGCTTTGCTCGGTGCCGTATTCGTCTTGTGCTGCGACATATTGGGGCGGCTGATCATCTTCCCGTATGAAATATCGATCG
GATTGATGGTCGGGGTAATCGGCAGCGGGATGTTCATTTTCCTACTTATGAGAAGAAAGGCTTATGACCGATGA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

55.769

98.423

0.549