Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   RGB74_RS20065 Genome accession   NZ_CP134049
Coordinates   3926799..3927920 (-) Length   373 a.a.
NCBI ID   WP_310760944.1    Uniprot ID   -
Organism   Bacillus sp. NEB1478     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3921799..3932920
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RGB74_RS20055 (RGB74_20055) gyrB 3924545..3926485 (-) 1941 WP_310760943.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  RGB74_RS20060 (RGB74_20060) remB 3926518..3926787 (-) 270 WP_310260480.1 extracellular matrix regulator RemB -
  RGB74_RS20065 (RGB74_20065) recF 3926799..3927920 (-) 1122 WP_310760944.1 DNA replication/repair protein RecF Machinery gene
  RGB74_RS20070 (RGB74_20070) yaaA 3927932..3928147 (-) 216 WP_310760945.1 S4 domain-containing protein YaaA -
  RGB74_RS20075 (RGB74_20075) dnaN 3928249..3929391 (-) 1143 WP_310760946.1 DNA polymerase III subunit beta -
  RGB74_RS20080 (RGB74_20080) dnaA 3929562..3930917 (-) 1356 WP_310760947.1 chromosomal replication initiator protein DnaA -

Sequence

Protein


Download         Length: 373 a.a.        Molecular weight: 43063.35 Da        Isoelectric Point: 9.1972

>NTDB_id=878393 RGB74_RS20065 WP_310760944.1 3926799..3927920(-) (recF) [Bacillus sp. NEB1478]
MHIEQLHLRNYRNYKQQSLSFENKVNVFLGENAQGKTNVMESIYVLAMARSYRTAKDKELITWDEEYAKIEGSIKKRNSS
FDLSLVISQKGKKAKISRIEQRRLTDYVGHFNVVMFAPEDLNLVKGSPQVRRRFIDMEIGQVNAVYLNDLSVYQKILSQR
NSLLRDMYRNKSTENMTMLEILTEQMIDKAARITLKRLTYMDKLQKWAEPIHHGISRGLESLKIHYKPTIEVCDEADLSK
MIEAFQQKFGKIKEKEIERGTTLFGPHRDDLLFSVNGKDVQTFGSQGQQRTTALSLKLAEIDLIHSEVGEYPVLLLDDVL
SELDDFRQSHLLNTIQGKVQTFVTTTSVEGIHHETLFKAATYQVHSGSIERLK

Nucleotide


Download         Length: 1122 bp        

>NTDB_id=878393 RGB74_RS20065 WP_310760944.1 3926799..3927920(-) (recF) [Bacillus sp. NEB1478]
TTGCATATTGAACAGCTTCATCTGAGGAACTACCGCAACTATAAACAACAGTCCCTTAGTTTTGAAAATAAGGTCAATGT
CTTTCTTGGCGAAAACGCACAAGGGAAAACAAATGTCATGGAATCTATCTATGTTTTGGCCATGGCTAGATCGTATCGAA
CGGCAAAAGATAAAGAGTTAATAACTTGGGACGAAGAGTATGCTAAAATAGAAGGTAGTATAAAAAAGAGAAACAGCTCT
TTTGATTTAAGTCTTGTTATTTCACAAAAAGGAAAAAAAGCGAAAATCAGCCGCATTGAACAACGGCGTCTAACCGATTA
CGTTGGACACTTCAATGTTGTTATGTTTGCACCTGAGGATTTAAATCTTGTAAAAGGCAGTCCGCAGGTGCGTCGTCGTT
TTATTGACATGGAAATCGGGCAGGTTAATGCTGTTTATCTGAATGACTTATCGGTGTACCAAAAAATTCTGTCTCAGCGA
AATTCTTTGTTAAGGGACATGTATCGGAATAAAAGTACGGAAAACATGACGATGCTTGAAATTTTAACAGAGCAGATGAT
AGATAAAGCGGCACGTATCACATTGAAGCGTTTAACTTATATGGATAAACTGCAAAAATGGGCCGAACCGATCCACCATG
GAATATCAAGAGGACTGGAAAGCTTGAAAATTCATTATAAACCTACGATAGAGGTATGTGATGAAGCAGATTTGTCGAAA
ATGATAGAAGCGTTTCAACAGAAATTTGGTAAAATAAAAGAAAAAGAGATTGAGCGGGGAACAACCTTATTCGGACCGCA
CCGGGATGATTTGTTATTTTCCGTTAATGGAAAAGATGTTCAAACGTTCGGATCCCAAGGACAGCAACGAACGACAGCAC
TCTCTTTGAAGTTAGCCGAGATCGATCTGATTCATTCCGAGGTAGGTGAATATCCCGTACTATTGCTGGATGATGTTCTC
TCCGAATTAGATGATTTCAGACAATCTCATCTGTTAAACACGATCCAAGGAAAAGTTCAAACCTTTGTTACGACGACCAG
TGTAGAAGGCATTCATCATGAAACATTGTTCAAGGCCGCAACATATCAAGTTCATTCAGGCTCCATAGAGCGATTGAAAT
GA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-349)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

65.312

98.928

0.646