Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   RGB74_RS19840 Genome accession   NZ_CP134049
Coordinates   3881770..3882054 (+) Length   94 a.a.
NCBI ID   WP_310760913.1    Uniprot ID   -
Organism   Bacillus sp. NEB1478     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3876770..3887054
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RGB74_RS19825 (RGB74_19825) - 3876819..3878027 (-) 1209 WP_310760910.1 ubiquitin-like domain-containing protein -
  RGB74_RS19830 (RGB74_19830) - 3878244..3879011 (-) 768 WP_310760911.1 TatD family hydrolase -
  RGB74_RS19835 (RGB74_19835) metG 3879189..3881162 (-) 1974 WP_310760912.1 methionine--tRNA ligase -
  RGB74_RS19840 (RGB74_19840) abrB 3881770..3882054 (+) 285 WP_310760913.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  RGB74_RS19845 (RGB74_19845) rsmI 3882152..3883036 (-) 885 WP_310760914.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  RGB74_RS19850 (RGB74_19850) - 3883011..3883304 (-) 294 WP_310760915.1 GIY-YIG nuclease family protein -
  RGB74_RS19855 (RGB74_19855) - 3883291..3884034 (-) 744 WP_310760916.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  RGB74_RS19860 (RGB74_19860) yabA 3884206..3884559 (-) 354 WP_310760917.1 DNA replication initiation control protein YabA -
  RGB74_RS19865 (RGB74_19865) - 3884574..3885404 (-) 831 WP_310760918.1 stage 0 sporulation family protein -
  RGB74_RS19870 (RGB74_19870) holB 3885409..3886398 (-) 990 WP_310760919.1 DNA polymerase III subunit delta' -
  RGB74_RS19875 (RGB74_19875) - 3886411..3886851 (-) 441 WP_310760920.1 YaaR family protein -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10493.20 Da        Isoelectric Point: 6.3523

>NTDB_id=878391 RGB74_RS19840 WP_310760913.1 3881770..3882054(+) (abrB) [Bacillus sp. NEB1478]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDDRIILKKYKPNMTCAVTGEVSDDNYTVAGGKIILSREGAK
EVMDELQKQLQTAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=878391 RGB74_RS19840 WP_310760913.1 3881770..3882054(+) (abrB) [Bacillus sp. NEB1478]
ATGAAATCTACAGGTATTGTACGTAAAGTTGACGAACTAGGACGCGTGGTAATTCCGATCGAACTTCGTCGTACTCTTGG
AATTGCAGAAAAAGATGCTCTAGAAATCTATGTGGATGACGATCGTATCATCCTTAAAAAATACAAGCCAAACATGACTT
GTGCAGTAACTGGTGAAGTTTCTGATGACAACTACACTGTTGCCGGCGGAAAAATCATCCTTAGCCGTGAAGGTGCTAAA
GAAGTTATGGACGAACTTCAAAAGCAATTACAAACTGCAAAGTAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)

AbrB C-terminal domain (AbrB_C)

(53-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

80.851

100

0.809