Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   RGB74_RS08885 Genome accession   NZ_CP134049
Coordinates   1802310..1802933 (-) Length   207 a.a.
NCBI ID   WP_310762626.1    Uniprot ID   -
Organism   Bacillus sp. NEB1478     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1797310..1807933
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RGB74_RS08870 (RGB74_08870) - 1797729..1798103 (+) 375 WP_310762623.1 YpoC family protein -
  RGB74_RS08875 (RGB74_08875) - 1798156..1799418 (+) 1263 WP_310762624.1 glycosyl hydrolase family 18 protein -
  RGB74_RS08880 (RGB74_08880) - 1799632..1802232 (-) 2601 WP_310762625.1 PBP1A family penicillin-binding protein -
  RGB74_RS08885 (RGB74_08885) recU 1802310..1802933 (-) 624 WP_310762626.1 Holliday junction resolvase RecU Machinery gene
  RGB74_RS08890 (RGB74_08890) - 1803005..1803253 (-) 249 WP_310762627.1 glutaredoxin family protein -
  RGB74_RS08895 (RGB74_08895) - 1803382..1804338 (+) 957 WP_310762628.1 DUF2515 family protein -
  RGB74_RS08900 (RGB74_08900) - 1804375..1804515 (-) 141 WP_310762629.1 hypothetical protein -
  RGB74_RS08905 (RGB74_08905) - 1804726..1805235 (+) 510 WP_310762630.1 MerR family transcriptional regulator -
  RGB74_RS08910 (RGB74_08910) - 1805301..1805657 (+) 357 WP_310762631.1 YppE family protein -
  RGB74_RS08915 (RGB74_08915) - 1805710..1806249 (+) 540 WP_310762632.1 hypothetical protein -
  RGB74_RS08920 (RGB74_08920) - 1806246..1807457 (+) 1212 WP_310762633.1 DEAD/DEAH box helicase -
  RGB74_RS08925 (RGB74_08925) - 1807508..1807804 (+) 297 WP_310762634.1 YciI family protein -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 23884.27 Da        Isoelectric Point: 9.8155

>NTDB_id=878374 RGB74_RS08885 WP_310762626.1 1802310..1802933(-) (recU) [Bacillus sp. NEB1478]
MGTFHYPNGKKIVSAIKTKKKSSSVPKKEISYSNRGMSLEDDLNQSNQYYLLTGKAVIHKKPTPVQIVNVEYPKRSAAVI
KEAYFKLASTTDYNGVYKGKYIDFEAKETKNKTSFPLKNFHEHQINHMQQIIDHGGISFVILRFSADDDIYLFDCRFLIQ
YWNEQKEGRKSIPKGEITEKGHSITIGYQPRLNYLEVVDRVYFSPSV

Nucleotide


Download         Length: 624 bp        

>NTDB_id=878374 RGB74_RS08885 WP_310762626.1 1802310..1802933(-) (recU) [Bacillus sp. NEB1478]
ATGGGGACATTTCATTATCCGAACGGCAAGAAGATCGTTTCTGCCATAAAAACAAAAAAGAAATCATCTTCAGTTCCTAA
AAAAGAGATTTCTTACAGCAATCGAGGAATGTCTTTAGAAGATGATCTGAATCAAAGTAATCAATACTATCTCCTCACAG
GGAAGGCTGTCATCCATAAAAAACCGACGCCAGTTCAAATCGTAAATGTAGAATATCCGAAAAGATCGGCGGCCGTCATT
AAGGAAGCCTATTTCAAACTCGCATCTACTACCGATTATAATGGGGTTTATAAAGGAAAATATATTGATTTTGAAGCAAA
GGAAACGAAGAACAAAACAAGCTTTCCTTTAAAAAATTTCCATGAACATCAAATCAATCATATGCAGCAGATTATTGATC
ATGGCGGAATCTCTTTTGTCATCCTGCGCTTTTCAGCTGATGATGACATCTACTTATTTGATTGCCGGTTTTTGATTCAA
TATTGGAATGAACAAAAAGAAGGAAGAAAATCAATTCCAAAGGGTGAAATTACCGAAAAAGGACATTCTATTACTATCGG
ATATCAACCAAGACTGAATTATTTAGAAGTAGTAGATCGAGTCTATTTTTCACCTTCTGTTTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(35-199)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

60.396

97.585

0.589