Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   RGB74_RS06980 Genome accession   NZ_CP134049
Coordinates   1455777..1456046 (+) Length   89 a.a.
NCBI ID   WP_310762269.1    Uniprot ID   -
Organism   Bacillus sp. NEB1478     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1450777..1461046
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RGB74_RS06950 (RGB74_06950) - 1451028..1452158 (+) 1131 WP_310762263.1 polysaccharide deacetylase family protein -
  RGB74_RS06955 (RGB74_06955) - 1452488..1452751 (+) 264 WP_310762264.1 hypothetical protein -
  RGB74_RS06960 (RGB74_06960) - 1452811..1453530 (-) 720 WP_310762265.1 3-ketoacyl-ACP reductase -
  RGB74_RS06965 (RGB74_06965) hxlB 1453646..1454203 (-) 558 WP_310762266.1 6-phospho-3-hexuloisomerase -
  RGB74_RS06970 (RGB74_06970) hxlA 1454212..1454844 (-) 633 WP_310762267.1 3-hexulose-6-phosphate synthase -
  RGB74_RS06975 (RGB74_06975) - 1455049..1455399 (+) 351 WP_310258146.1 winged helix-turn-helix transcriptional regulator -
  RGB74_RS06980 (RGB74_06980) abrB 1455777..1456046 (+) 270 WP_310762269.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  RGB74_RS06985 (RGB74_06985) - 1456403..1456534 (-) 132 WP_310762270.1 hypothetical protein -
  RGB74_RS06990 (RGB74_06990) - 1456741..1456941 (+) 201 Protein_1391 RNA polymerase subunit sigma-70 -
  RGB74_RS06995 (RGB74_06995) - 1457414..1457620 (-) 207 WP_310762271.1 hypothetical protein -
  RGB74_RS07000 (RGB74_07000) - 1457687..1458310 (-) 624 WP_310762273.1 hypothetical protein -
  RGB74_RS07005 (RGB74_07005) - 1458537..1459280 (-) 744 WP_310762274.1 hypothetical protein -
  RGB74_RS07010 (RGB74_07010) - 1459486..1460835 (+) 1350 WP_310762275.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 89 a.a.        Molecular weight: 10065.73 Da        Isoelectric Point: 4.8779

>NTDB_id=878369 RGB74_RS06980 WP_310762269.1 1455777..1456046(+) (abrB) [Bacillus sp. NEB1478]
MKSTGVVRKVDELGRIVIPIELRRIMEIEQKDGLEIFVENEKVILKKYEANNACVVTGEVTNDNKMYFNGKIILSPNGAE
SLLDELKTL

Nucleotide


Download         Length: 270 bp        

>NTDB_id=878369 RGB74_RS06980 WP_310762269.1 1455777..1456046(+) (abrB) [Bacillus sp. NEB1478]
TTGAAAAGTACCGGTGTTGTAAGAAAGGTAGATGAATTAGGGAGGATTGTCATCCCTATAGAATTACGAAGAATTATGGA
GATCGAACAAAAAGATGGATTAGAGATATTTGTAGAAAATGAAAAGGTCATATTAAAGAAGTATGAAGCAAATAATGCTT
GTGTTGTGACAGGTGAAGTAACAAATGACAATAAGATGTACTTCAATGGAAAAATTATTTTAAGTCCTAATGGTGCAGAA
TCCCTTCTGGATGAACTGAAAACATTATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-87)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

60.92

97.753

0.596