Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   RGB74_RS01890 Genome accession   NZ_CP134049
Coordinates   385359..385679 (-) Length   106 a.a.
NCBI ID   WP_310762771.1    Uniprot ID   -
Organism   Bacillus sp. NEB1478     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 380359..390679
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RGB74_RS01865 (RGB74_01865) - 380802..381254 (+) 453 WP_310761295.1 GNAT family N-acetyltransferase -
  RGB74_RS01870 (RGB74_01870) - 381377..381850 (+) 474 WP_310761296.1 hypothetical protein -
  RGB74_RS01875 (RGB74_01875) - 382006..382659 (+) 654 WP_310761297.1 NlpC/P60 family protein -
  RGB74_RS01880 (RGB74_01880) - 383219..384259 (-) 1041 WP_310761298.1 STAS domain-containing protein -
  RGB74_RS01885 (RGB74_01885) - 384392..385162 (-) 771 WP_310761299.1 SGNH/GDSL hydrolase family protein -
  RGB74_RS01890 (RGB74_01890) sinR 385359..385679 (-) 321 WP_310762771.1 helix-turn-helix domain-containing protein Regulator
  RGB74_RS01895 (RGB74_01895) - 385749..385901 (-) 153 WP_310761300.1 anti-repressor SinI family protein -
  RGB74_RS01900 (RGB74_01900) - 386216..387184 (+) 969 WP_310761301.1 nitronate monooxygenase -
  RGB74_RS01905 (RGB74_01905) - 387419..387787 (+) 369 WP_310761302.1 hypothetical protein -
  RGB74_RS01910 (RGB74_01910) - 387892..388287 (+) 396 WP_310761303.1 hypothetical protein -
  RGB74_RS01915 (RGB74_01915) - 388308..388769 (+) 462 WP_310761304.1 DUF2569 family protein -
  RGB74_RS01920 (RGB74_01920) - 389003..389428 (+) 426 WP_310761305.1 hypothetical protein -

Sequence

Protein


Download         Length: 106 a.a.        Molecular weight: 12145.93 Da        Isoelectric Point: 7.2039

>NTDB_id=878357 RGB74_RS01890 WP_310762771.1 385359..385679(-) (sinR) [Bacillus sp. NEB1478]
MIGERVKKYRMEKGLSITALAEKAGVAKSYISALERNIQQNPSIQLLEKIADVLNISVDHLINQEVDTKNLDHEWAELVK
EAMGSGVSKEQFKEFLEFNKWKNKQN

Nucleotide


Download         Length: 321 bp        

>NTDB_id=878357 RGB74_RS01890 WP_310762771.1 385359..385679(-) (sinR) [Bacillus sp. NEB1478]
ATGATTGGTGAACGAGTAAAAAAATACCGTATGGAAAAAGGGCTCTCCATAACAGCTTTAGCTGAAAAAGCTGGAGTTGC
TAAATCCTACATAAGTGCATTAGAACGAAATATACAACAGAATCCATCCATACAGCTCTTAGAAAAAATCGCTGATGTTC
TAAATATTTCAGTTGATCACTTGATTAATCAAGAAGTCGATACAAAGAATTTAGACCACGAGTGGGCAGAGCTTGTAAAG
GAAGCTATGGGTTCAGGTGTGAGTAAAGAACAATTTAAAGAATTCCTAGAGTTTAATAAGTGGAAAAATAAACAAAACTA
G

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(71-98)

Helix-turn-helix (HTH_3)

(6-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

57.407

100

0.585