Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrB   Type   Machinery gene
Locus tag   RE424_RS00165 Genome accession   NZ_CP134047
Coordinates   37151..38779 (-) Length   542 a.a.
NCBI ID   WP_023914395.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 21SAU_AGRO3     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 32151..43779
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RE424_RS00130 rlmH 33168..33647 (+) 480 WP_023914385.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  RE424_RS00135 - 33753..33899 (+) 147 WP_023914387.1 hypothetical protein -
  RE424_RS00140 - 33892..35076 (+) 1185 WP_023914389.1 restriction endonuclease subunit S -
  RE424_RS00145 - 35181..35402 (-) 222 WP_023914391.1 hypothetical protein -
  RE424_RS00150 - 35417..35920 (-) 504 WP_023914392.1 DUF1643 domain-containing protein -
  RE424_RS00155 - 35936..36247 (-) 312 WP_000700852.1 DUF960 family protein -
  RE424_RS00160 - 36334..36684 (-) 351 WP_000859159.1 SAUGI family uracil-DNA glycosylase inhibitor -
  RE424_RS00165 ccrB 37151..38779 (-) 1629 WP_023914395.1 cassette chromosome recombinase CcrB Machinery gene
  RE424_RS00170 ccrA 38800..40149 (-) 1350 WP_000806249.1 cassette chromosome recombinase CcrA Machinery gene
  RE424_RS00175 - 40427..40618 (-) 192 WP_023914397.1 hypothetical protein -
  RE424_RS00180 cch1 40689..42476 (-) 1788 WP_023914399.1 cassette chromosome replicative helicase -
  RE424_RS00185 - 42476..42745 (-) 270 WP_000875688.1 hypothetical protein -

Sequence

Protein


Download         Length: 542 a.a.        Molecular weight: 62581.36 Da        Isoelectric Point: 9.4615

>NTDB_id=878310 RE424_RS00165 WP_023914395.1 37151..38779(-) (ccrB) [Staphylococcus aureus strain 21SAU_AGRO3]
MQQLKQKRIGIYVRVSTEIQSTEGYSINGQINQIREYCDFNNFVVVDVYADRGISGKSMNRPELQRLLKDANEGHIDCVM
VYKTNRLARNTSDLLKIVEDLHRQNVEFFSLSERMEVNTSSGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGN
LPLGYDKIPDSKHELMINQHEANIIKYIFESYAKGHGYRKMANALNHKGYVTKKGNPFSTSAIAYILSNPFYIGKIQFAK
YKDWNEKRRKGLNDNPVVADGKHSPIISQELWDKVHSRMKQVSEKPQVHGKGTNLLTGIIRCPQCGAPMAASNTTNTLKD
GTKKRIRYYSCSNFRNKGSKVCSANSVRAEVIEKYVMDQIFEIVKSDKVLKQVVERVNQDSQIDMAALNHDIAYKQQQFD
EINTKLKNLIQTIEDNPDLTSALKPTIHQYETQLNDITNQMNQLKHQQNQEKPSYDTKQIAALLQRIFQNIESMDKSQLK
ALYLTVIERIDIRKDENHKKQFYVTLKLNNEIIKQLFNDTPLDEVLLSTSSLFLPQTLYFQI

Nucleotide


Download         Length: 1629 bp        

>NTDB_id=878310 RE424_RS00165 WP_023914395.1 37151..38779(-) (ccrB) [Staphylococcus aureus strain 21SAU_AGRO3]
ATGCAACAACTCAAACAAAAACGTATCGGTATCTATGTTCGTGTATCAACGGAAATCCAAAGTACTGAAGGCTATAGTAT
CAATGGACAAATCAATCAAATTCGAGAATATTGTGATTTCAATAACTTTGTTGTTGTAGATGTATACGCGGATAGAGGTA
TTTCTGGAAAATCTATGAACCGACCAGAACTACAACGTTTATTAAAAGATGCGAACGAAGGTCATATCGATTGTGTCATG
GTGTATAAAACGAATAGACTCGCACGTAATACATCAGACTTACTCAAAATTGTTGAAGACCTTCATCGTCAAAATGTCGA
ATTCTTCAGCTTATCTGAACGTATGGAAGTTAATACAAGCAGTGGTAAACTGATGCTACAAATACTTGCAAGCTTTTCTG
AATTTGAACGCAATAACATTGTCGAGAACGTATTCATGGGACAAACCCGACGTGCTCAAGAAGGCTATTATCAAGGCAAT
TTGCCGCTAGGCTATGACAAAATACCGGATAGCAAGCATGAACTCATGATAAATCAACATGAAGCTAATATCATCAAATA
TATCTTTGAGTCATATGCTAAAGGCCACGGATATCGTAAAATGGCTAATGCACTTAATCATAAAGGTTATGTAACAAAGA
AAGGTAATCCATTCAGTACATCAGCTATTGCTTATATCCTTTCCAATCCCTTCTACATTGGTAAAATTCAATTTGCGAAG
TATAAAGATTGGAATGAAAAGCGACGTAAAGGCCTTAATGATAATCCTGTAGTAGCTGACGGGAAGCATTCACCTATCAT
TAGTCAAGAACTATGGGATAAAGTACATTCACGTATGAAACAAGTAAGTGAAAAACCACAAGTGCATGGTAAAGGAACCA
ATCTATTAACGGGTATTATTCGCTGCCCACAATGTGGTGCACCAATGGCAGCTAGTAACACTACGAACACATTGAAAGAT
GGTACCAAGAAGCGAATACGCTATTATTCTTGTAGTAATTTTCGAAACAAAGGCTCAAAAGTATGTTCTGCGAATAGTGT
TAGAGCTGAGGTGATTGAGAAATACGTTATGGATCAAATATTTGAAATTGTCAAAAGCGATAAAGTTCTCAAACAAGTTG
TCGAACGTGTTAATCAAGATAGTCAAATTGATATGGCTGCACTTAACCATGATATCGCATATAAGCAACAACAATTTGAT
GAAATAAACACTAAACTAAAAAATCTAATTCAAACCATCGAAGACAATCCAGACTTAACATCTGCACTCAAACCAACCAT
TCATCAATATGAAACACAACTCAATGACATTACAAATCAAATGAATCAACTCAAGCACCAACAAAATCAAGAGAAACCAT
CTTATGATACGAAACAAATCGCTGCCCTATTACAACGAATATTTCAAAATATAGAATCCATGGATAAATCACAGCTCAAA
GCTTTATACCTAACGGTTATTGAACGTATTGACATTCGTAAAGATGAGAATCATAAAAAGCAATTCTACGTTACACTAAA
ACTTAATAATGAAATTATTAAACAACTTTTCAATGATACCCCACTCGACGAAGTGCTCCTCAGCACTTCTTCTTTGTTTT
TGCCTCAAACACTCTACTTTCAAATCTAA

Domains

Predicted by InterproScan.

Ogr/Delta-like zinc finger (Ogr_Delta)

(301-356)

Recombinase (Recombinase)

(180-281)

Resolvase, N terminal domain (Resolvase)

(11-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrB Staphylococcus aureus N315

83.764

100

0.838