Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   AABJ98_RS09355 Genome accession   NZ_AP027599
Coordinates   1883925..1884440 (-) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain LR-71-1     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1878925..1889440
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABJ98_RS09330 (VEE28_18250) ygaZ 1879324..1880061 (+) 738 WP_000445658.1 L-valine exporter subunit YgaZ -
  AABJ98_RS09335 (VEE28_18260) ygaH 1880051..1880386 (+) 336 WP_000119766.1 L-valine transporter subunit YgaH -
  AABJ98_RS09340 (VEE28_18270) emrR 1880477..1881007 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  AABJ98_RS09345 (VEE28_18280) emrA 1881134..1882306 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  AABJ98_RS09350 (VEE28_18290) emrB 1882323..1883861 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  AABJ98_RS09355 (VEE28_18300) luxS 1883925..1884440 (-) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  AABJ98_RS09360 (VEE28_18310) gshA 1884590..1886146 (-) 1557 WP_000611804.1 glutamate--cysteine ligase -
  AABJ98_RS09365 (VEE28_18320) yqaA 1886219..1886647 (-) 429 WP_001287454.1 YqaA family protein -
  AABJ98_RS09370 (VEE28_18330) yqaB 1886644..1887210 (-) 567 WP_000273289.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  AABJ98_RS09400 (VEE28_18340) csrA 1888668..1888853 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=87819 AABJ98_RS09355 WP_001130211.1 1883925..1884440(-) (luxS) [Escherichia coli strain LR-71-1]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=87819 AABJ98_RS09355 WP_001130211.1 1883925..1884440(-) (luxS) [Escherichia coli strain LR-71-1]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment