Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   RDV49_RS10245 Genome accession   NZ_CP133988
Coordinates   2111614..2112345 (-) Length   243 a.a.
NCBI ID   WP_003010412.1    Uniprot ID   A0AAX4AXI9
Organism   Streptococcus parasanguinis strain B-1756     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2106614..2117345
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV49_RS10210 (RDV49_10210) - 2106728..2107027 (-) 300 WP_003010399.1 YlxQ-related RNA-binding protein -
  RDV49_RS10215 (RDV49_10215) rnpM 2107020..2107316 (-) 297 WP_003010401.1 RNase P modulator RnpM -
  RDV49_RS10220 (RDV49_10220) nusA 2107331..2108473 (-) 1143 WP_003010402.1 transcription termination factor NusA -
  RDV49_RS10225 (RDV49_10225) rimP 2108518..2108997 (-) 480 WP_003010404.1 ribosome maturation factor RimP -
  RDV49_RS10230 (RDV49_10230) trmB 2109095..2109730 (-) 636 WP_003010406.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  RDV49_RS10235 (RDV49_10235) ccrZ 2109727..2110521 (-) 795 WP_003003852.1 cell cycle regulator CcrZ -
  RDV49_RS10240 (RDV49_10240) - 2110562..2111617 (-) 1056 WP_003010409.1 ABC transporter permease -
  RDV49_RS10245 (RDV49_10245) pptA 2111614..2112345 (-) 732 WP_003010412.1 ABC transporter ATP-binding protein Regulator
  RDV49_RS10250 (RDV49_10250) - 2112413..2112826 (+) 414 WP_003010414.1 HIT family protein -
  RDV49_RS10255 (RDV49_10255) - 2112839..2113129 (+) 291 WP_003010416.1 hypothetical protein -
  RDV49_RS10260 (RDV49_10260) - 2113151..2114344 (-) 1194 WP_003010418.1 LCP family protein -
  RDV49_RS10265 (RDV49_10265) - 2114358..2114888 (-) 531 WP_003010420.1 GNAT family N-acetyltransferase -
  RDV49_RS10270 (RDV49_10270) tsaE 2114881..2115336 (-) 456 WP_003010422.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  RDV49_RS10275 (RDV49_10275) - 2115515..2116936 (-) 1422 WP_037608316.1 NCS2 family permease -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27002.29 Da        Isoelectric Point: 4.5763

>NTDB_id=878189 RDV49_RS10245 WP_003010412.1 2111614..2112345(-) (pptA) [Streptococcus parasanguinis strain B-1756]
MLEINKLTGGYVNIPVLKEVSFSVPDGQLIGLIGLNGAGKSTTINEIIGLLHPYAGEVRIDGLSLPEAPTDYRKKIGYIP
ETPSLYEELTLREHIETVAMAYDLDMDQVMVRVHPLLERFRLAEKLDWFPTQFSKGMKQKVMIICAYAVDPSLYIVDEPF
LGLDPVAIADLIQLLADEKAKGKSILMSTHVLDSAEKMCDGFVILHKGQIRAKGTLDELRSTFGDEKASLNDIYMTLTEE
ETA

Nucleotide


Download         Length: 732 bp        

>NTDB_id=878189 RDV49_RS10245 WP_003010412.1 2111614..2112345(-) (pptA) [Streptococcus parasanguinis strain B-1756]
ATGTTAGAAATCAACAAGTTGACAGGGGGCTATGTCAACATCCCTGTCCTGAAAGAGGTGAGTTTTTCAGTTCCGGATGG
CCAACTGATTGGTTTGATTGGACTAAATGGAGCTGGGAAGTCAACCACGATTAATGAAATTATTGGTCTCCTGCATCCTT
ATGCTGGGGAAGTACGGATTGACGGCTTGAGTCTTCCAGAAGCTCCAACTGACTATCGTAAAAAAATCGGCTATATTCCA
GAAACCCCTAGCCTATATGAAGAATTAACCCTGAGAGAGCATATCGAGACCGTAGCTATGGCCTATGATTTAGACATGGA
TCAGGTCATGGTGCGCGTCCATCCTTTGTTGGAACGATTTCGTTTGGCTGAAAAATTAGATTGGTTCCCGACCCAGTTTT
CAAAAGGGATGAAGCAAAAGGTCATGATTATTTGCGCCTATGCAGTGGATCCAAGTCTTTATATTGTCGATGAACCCTTT
TTGGGATTGGATCCTGTTGCGATTGCAGATTTGATTCAGTTATTGGCAGATGAGAAAGCAAAAGGAAAATCGATTTTGAT
GAGTACTCACGTTCTGGATTCGGCTGAAAAGATGTGTGATGGTTTTGTGATCCTCCATAAGGGTCAGATCCGAGCAAAAG
GGACCTTGGACGAGCTGCGTTCAACTTTTGGGGATGAGAAAGCAAGTCTAAATGATATCTACATGACCTTGACAGAAGAG
GAAACAGCATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

75.519

99.177

0.749
  pptA Streptococcus thermophilus LMD-9

75.519

99.177

0.749