Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA/cilB/dalA   Type   Machinery gene
Locus tag   RDV49_RS06820 Genome accession   NZ_CP133988
Coordinates   1440893..1441741 (+) Length   282 a.a.
NCBI ID   WP_003007405.1    Uniprot ID   A0AAX4AVP2
Organism   Streptococcus parasanguinis strain B-1756     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1435893..1446741
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV49_RS06795 (RDV49_06795) dapA 1436834..1437769 (+) 936 WP_037607907.1 4-hydroxy-tetrahydrodipicolinate synthase -
  RDV49_RS06800 (RDV49_06800) - 1437841..1438179 (+) 339 WP_006597242.1 ATP cone domain-containing protein -
  RDV49_RS06805 (RDV49_06805) ylqF 1438293..1439144 (+) 852 WP_023918177.1 ribosome biogenesis GTPase YlqF -
  RDV49_RS06810 (RDV49_06810) - 1439131..1439898 (+) 768 WP_003007409.1 ribonuclease HII -
  RDV49_RS06815 (RDV49_06815) - 1439902..1440831 (+) 930 WP_003007407.1 ROK family protein -
  RDV49_RS06820 (RDV49_06820) dprA/cilB/dalA 1440893..1441741 (+) 849 WP_003007405.1 DNA-processing protein DprA Machinery gene
  RDV49_RS06825 (RDV49_06825) topA 1441828..1443909 (+) 2082 WP_003007403.1 type I DNA topoisomerase -
  RDV49_RS06830 (RDV49_06830) - 1444008..1444685 (+) 678 WP_003007400.1 SatD family protein -
  RDV49_RS06835 (RDV49_06835) - 1444669..1445373 (+) 705 WP_003007397.1 DUF3307 domain-containing protein -

Sequence

Protein


Download         Length: 282 a.a.        Molecular weight: 31714.50 Da        Isoelectric Point: 6.4137

>NTDB_id=878170 RDV49_RS06820 WP_003007405.1 1440893..1441741(+) (dprA/cilB/dalA) [Streptococcus parasanguinis strain B-1756]
MEKFEIFKLKEAGLSNEQVLRVLDYCRKDQALPSLEEIARIARCRSIIHFVDKYRQLDEEHLHKEFERFPSLSIFDPEYP
EELLQIYNPPVLLFYQGDLQLLSKPKIAVVGARETTREGVRSVEKIIKELGNELVIVSGLAKGIDATAHYASIRNGGKTI
GVIGTGLDVFYPKSNQRLQTYMGEHHLILSEYGPGQAPLKFHFPERNRIIAGLCQAVIVAEARLRSGSLITCERAMEEGR
DVFAIPGNILDGKSAGCHHLIQEGAKLVTSGQDILDELKYEL

Nucleotide


Download         Length: 849 bp        

>NTDB_id=878170 RDV49_RS06820 WP_003007405.1 1440893..1441741(+) (dprA/cilB/dalA) [Streptococcus parasanguinis strain B-1756]
ATGGAGAAATTTGAAATCTTTAAATTAAAAGAAGCTGGTTTATCAAATGAGCAAGTCTTGAGAGTTTTGGACTACTGTAG
GAAAGACCAAGCCTTACCAAGCTTAGAAGAGATAGCAAGGATCGCTCGCTGTCGCAGTATTATTCATTTTGTAGACAAAT
ACCGGCAGCTGGATGAAGAGCATTTACACAAGGAGTTTGAACGGTTCCCATCTCTATCCATTTTTGATCCTGAATACCCT
GAGGAATTGCTACAGATCTACAATCCTCCTGTACTCCTTTTTTACCAAGGGGATTTGCAACTGTTAAGCAAACCGAAGAT
TGCAGTTGTTGGAGCTCGAGAGACCACGCGAGAAGGGGTTCGTTCTGTAGAGAAGATAATTAAGGAACTTGGAAATGAAC
TGGTCATTGTTAGTGGACTTGCTAAGGGAATTGATGCGACAGCGCATTATGCCAGCATTCGTAATGGTGGAAAGACCATC
GGAGTGATAGGAACGGGGCTGGATGTTTTTTATCCGAAAAGTAATCAGAGATTACAGACCTACATGGGAGAGCACCATCT
GATCTTGAGCGAGTATGGTCCAGGACAGGCCCCTTTGAAGTTTCATTTTCCTGAGAGAAACCGCATCATTGCAGGACTCT
GTCAGGCTGTGATTGTGGCAGAGGCACGACTTCGTTCAGGGAGTTTAATTACTTGTGAGCGTGCCATGGAGGAAGGACGA
GATGTTTTTGCTATTCCAGGAAACATTTTAGATGGAAAATCTGCAGGATGCCATCACTTGATTCAAGAAGGTGCAAAGCT
TGTCACATCAGGCCAGGACATTCTTGATGAATTGAAATACGAATTGTGA

Domains

Predicted by InterproScan.

DNA processing protein A sterile alpha motif domain (SAM_DprA)

(1-62)

DNA recombination-mediator protein A (DNA_processg_A)

(72-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA/cilB/dalA Streptococcus mitis NCTC 12261

66.548

99.645

0.663
  dprA/cilB/dalA Streptococcus pneumoniae D39

66.192

99.645

0.66
  dprA/cilB/dalA Streptococcus pneumoniae R6

66.192

99.645

0.66
  dprA/cilB/dalA Streptococcus pneumoniae TIGR4

66.192

99.645

0.66
  dprA/cilB/dalA Streptococcus pneumoniae Rx1

66.192

99.645

0.66
  dprA/cilB/dalA Streptococcus mitis SK321

65.836

99.645

0.656
  dprA Streptococcus mutans UA159

61.786

99.291

0.613
  dprA Lactococcus lactis subsp. cremoris KW2

53.381

99.645

0.532
  dprA Latilactobacillus sakei subsp. sakei 23K

44.314

90.426

0.401