Detailed information NTG0878158

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: RDV49_RS03035
• Genome accession: NZ_CP133988
• Coordinates: 610429..612858 (+)
• Length: 809 a.a.
• NCBI ID: WP_003009027.1
• Uniprot ID: -
• Organism: Streptococcus parasanguinis strain B-1756
• Function: degradation of ComW (predicted from homology) Competence regulation

Genomic Context

Location: 605429..617858

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RDV49_RS03025 (RDV49_03025)	-	605879..609589 (+)	3711	WP_003009031.1	alpha-L-fucosidase	-
RDV49_RS03030 (RDV49_03030)	-	609964..610428 (+)	465	WP_003009029.1	CtsR family transcriptional regulator	-
RDV49_RS03035 (RDV49_03035)	clpC	610429..612858 (+)	2430	WP_003009027.1	ATP-dependent Clp protease ATP-binding subunit	Regulator
RDV49_RS03040 (RDV49_03040)	-	612868..613356 (+)	489	WP_003009025.1	hypothetical protein	-
RDV49_RS03045 (RDV49_03045)	-	613334..613741 (+)	408	WP_003009023.1	DUF4430 domain-containing protein	-
RDV49_RS03050 (RDV49_03050)	-	613906..614631 (+)	726	WP_037608145.1	hypothetical protein	-
RDV49_RS03055 (RDV49_03055)	-	614796..615857 (+)	1062	WP_003009019.1	AAA family ATPase	-
RDV49_RS03060 (RDV49_03060)	-	615868..616059 (+)	192	Protein_562	hypothetical protein	-
RDV49_RS03065 (RDV49_03065)	-	616084..616860 (+)	777	WP_003009015.1	NUDIX hydrolase	-
RDV49_RS03070 (RDV49_03070)	-	616990..617676 (+)	687	WP_003009013.1	YoaK family protein	-

Sequence

Protein

• Length: 809 a.a.
• Molecular weight: 89670.14 Da
• Isoelectric Point: 5.4184

>NTDB_id=878158 RDV49_RS03035 WP_003009027.1 610429..612858(+) (clpC) [Streptococcus parasanguinis strain B-1756]
MNYSTALLESIEAAQILAGHYQGHTLDTWHLLTAMANNPYSVAGSVLNDYPMQIDEFQDAAEHITGQAFQSDNRYEIFPF
SYRMEAIMKHAREIAQVLHAKTLGTEHVLLSLLADRGTLASQVMEFAGFAFTEQDKGVPIASLRKNLEDKAGWDKNDIKA
IRSLYRAQNPNRQTMGNMMGMPPSTSGGLEDYTRDLTEMARAGQLEPVIGRDAEISRMIQILSRKTKNNPVLVGEAGVGK
TALALGLAQRVASGNVPAEIAQMRVLELDLMNVVAGTRFRGDFEERMNNIIQDIEEDGHVILFIDELHTIMGSGSGIDST
LDAANILKPALARGTLRTVGATTQDEYQKHIEKDAALSRRFAKVTIEEPSVADSIQILQGLKETYQDHHHVTITDEAIET
AVKYAHRYLTSRQLPDSAIDLLDEAAATVQNRDSNGHVKEELTALDRALMDGKWKKAAQLIEVEAAPVVYKKEVTDQDVL
VTLSQLSGIPTQKLTQTDAKKYLNLEAELHKRVIGQDQAVSSISRAIRRNQSGIRSNKRPIGSFMFLGPTGVGKTELAKA
LAEVLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVGYEEGGELTEKVRNKPYSVLLFDEVEKAHPDIFNVLLQVLDDG
VLTDSKGRKIDFSNTIIIMTSNLGATALRDDKTVGFGAKDIRFDQANMEKRMFEELKKTYRPEFINRIDEKVVFHSLSSE
DMQQVVKVMVKPLIATLAEQGMTLKFQPSALKLLATKGYDPEMGARPLRRVLQTEVEDQLAELLLKGQAQEGQTIKVGTT
AGTIKFEIV

Nucleotide

• Length: 2430 bp

>NTDB_id=878158 RDV49_RS03035 WP_003009027.1 610429..612858(+) (clpC) [Streptococcus parasanguinis strain B-1756]
ATGAACTATTCAACAGCACTGTTAGAAAGTATAGAAGCGGCCCAAATACTAGCAGGCCACTATCAGGGACATACCTTAGA
TACTTGGCATCTCCTGACGGCTATGGCCAATAATCCCTATAGCGTGGCAGGTTCTGTACTTAACGATTATCCTATGCAGA
TCGATGAGTTTCAGGATGCAGCGGAGCATATTACAGGCCAAGCTTTTCAAAGCGACAATCGGTATGAAATCTTCCCATTT
TCTTATCGGATGGAAGCCATTATGAAACACGCAAGAGAGATTGCCCAGGTTCTTCATGCCAAGACCTTGGGAACAGAGCA
TGTGCTCCTCTCTCTTCTAGCAGACCGTGGAACCTTGGCGAGCCAAGTCATGGAGTTTGCCGGCTTTGCCTTTACAGAGC
AAGACAAGGGAGTTCCTATTGCCTCCCTTCGCAAGAATTTAGAAGACAAAGCAGGCTGGGACAAGAATGATATCAAAGCC
ATTCGGAGTCTCTATCGGGCCCAAAACCCCAACCGCCAAACCATGGGAAATATGATGGGCATGCCCCCAAGCACCAGTGG
AGGTCTTGAAGATTATACCCGTGATCTGACAGAAATGGCGCGTGCAGGCCAGCTTGAACCTGTGATTGGCCGGGATGCAG
AGATTTCACGCATGATCCAAATCCTCAGCCGCAAGACGAAGAACAATCCTGTATTGGTGGGAGAAGCAGGGGTCGGAAAA
ACCGCTCTTGCATTAGGTCTGGCCCAGCGGGTCGCTAGTGGCAATGTTCCAGCTGAAATCGCGCAAATGCGTGTCTTAGA
ATTGGATCTCATGAATGTCGTTGCAGGGACGCGCTTCCGTGGGGACTTCGAAGAGCGGATGAACAATATCATCCAGGACA
TCGAAGAAGACGGTCACGTGATTCTCTTTATCGATGAACTGCATACTATTATGGGGTCAGGATCCGGTATTGATTCGACC
TTAGACGCAGCCAATATTCTAAAACCAGCCCTGGCACGGGGAACCTTGCGTACAGTTGGGGCAACGACTCAAGATGAGTA
CCAAAAGCATATCGAAAAAGACGCAGCCCTCTCTCGACGTTTTGCGAAAGTCACCATTGAAGAGCCAAGTGTTGCAGATA
GCATCCAAATTCTCCAAGGCTTGAAAGAGACCTATCAGGACCACCATCATGTGACAATTACCGATGAAGCGATCGAAACA
GCTGTCAAATATGCCCACCGCTATTTGACCAGCCGTCAATTGCCAGATTCAGCCATTGATCTCTTGGATGAAGCGGCAGC
TACTGTACAAAACCGCGATTCCAACGGTCACGTAAAAGAAGAGTTGACCGCCTTAGACCGGGCCTTGATGGATGGCAAGT
GGAAGAAAGCAGCCCAACTCATAGAAGTAGAGGCCGCTCCCGTTGTCTACAAAAAAGAAGTCACTGACCAAGATGTCTTG
GTGACCTTGAGCCAATTATCTGGTATTCCAACTCAAAAACTGACCCAAACCGATGCCAAGAAGTACCTCAACTTAGAAGC
AGAATTGCACAAGCGCGTGATTGGTCAAGACCAAGCGGTTTCGAGTATCAGTCGGGCTATTCGACGCAATCAATCAGGTA
TCCGTAGCAATAAACGTCCGATCGGTTCTTTCATGTTCCTAGGACCTACCGGTGTCGGAAAAACAGAGCTAGCCAAAGCT
TTGGCGGAAGTTTTGTTTGATGATGAATCGGCCCTCATCCGTTTTGATATGAGTGAGTACATGGAAAAATTCGCGGCCAG
CCGCCTCAACGGAGCCCCTCCAGGCTATGTGGGCTACGAAGAAGGAGGCGAGTTGACCGAGAAAGTCCGCAACAAACCAT
ATTCAGTTCTCTTATTTGATGAGGTGGAAAAAGCCCATCCAGATATTTTCAATGTCCTTTTGCAAGTCTTGGATGACGGA
GTCTTAACCGATAGCAAAGGCCGGAAGATCGACTTCTCCAATACCATTATCATCATGACCTCAAACCTGGGAGCTACAGC
CCTTCGGGATGATAAGACCGTTGGCTTTGGTGCCAAAGATATCCGCTTTGACCAAGCCAATATGGAAAAACGCATGTTTG
AAGAGTTGAAGAAGACCTATCGTCCAGAGTTTATCAACCGGATTGATGAAAAGGTGGTCTTCCATAGTCTCTCAAGCGAG
GACATGCAGCAGGTAGTGAAAGTCATGGTCAAACCGCTCATCGCGACCTTGGCAGAACAAGGCATGACCCTCAAATTCCA
GCCTTCAGCGCTCAAGTTGCTAGCAACCAAAGGCTACGATCCAGAAATGGGAGCTCGCCCACTGCGTCGTGTCTTGCAGA
CCGAAGTGGAAGATCAACTAGCAGAGCTATTGCTGAAAGGTCAAGCCCAAGAAGGGCAAACGATCAAGGTTGGAACGACA
GCTGGAACGATCAAGTTCGAGATTGTCTAG

Domains

Predicted by InterproScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (717-797)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (24-65)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (91-128)

• AAA lid domain (AAA_lid_9) (370-458)

• ATPase family associated with various cellular activities (AAA) (AAA) (231-362)

• AAA domain (Cdc48 subfamily) (AAA_2) (539-710)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Streptococcus pneumoniae TIGR4	77.065	100	0.773
clpC	Streptococcus pneumoniae Rx1	77.065	100	0.773
clpC	Streptococcus pneumoniae D39	77.065	100	0.773
clpC	Streptococcus mutans UA159	66.095	100	0.667
clpC	Streptococcus thermophilus LMG 18311	64.742	100	0.651
clpC	Streptococcus thermophilus LMD-9	64.742	100	0.651
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	50.361	100	0.518
clpC	Bacillus subtilis subsp. subtilis str. 168	45.363	98.64	0.447
clpE	Streptococcus mutans UA159	47.687	77.503	0.37
clpE	Streptococcus pneumoniae Rx1	45.763	80.222	0.367
clpE	Streptococcus pneumoniae D39	45.763	80.222	0.367
clpE	Streptococcus pneumoniae R6	45.763	80.222	0.367
clpE	Streptococcus pneumoniae TIGR4	45.763	80.222	0.367
clpC	Lactococcus lactis subsp. cremoris KW2	45.625	79.11	0.361