Detailed information NTG0878122

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QQE96_RS18560
• Genome accession: NZ_CP133987
• Coordinates: 2839997..2840995 (-)
• Length: 332 a.a.
• NCBI ID: WP_168523346.1
• Uniprot ID: -
• Organism: Vibrio aestuarianus subsp. francensis strain LC_Sco
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2834997..2845995

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QQE96_RS18550 (QQE96_18605)	-	2836233..2836892 (+)	660	Protein_2569	hypothetical protein	-
QQE96_RS18555 (QQE96_18610)	mutS	2837332..2839917 (+)	2586	WP_168523344.1	DNA mismatch repair protein MutS	-
QQE96_RS18560 (QQE96_18615)	rpoS	2839997..2840995 (-)	999	WP_168523346.1	RNA polymerase sigma factor RpoS	Regulator
QQE96_RS18565 (QQE96_18620)	nlpD	2841067..2842002 (-)	936	WP_168524075.1	murein hydrolase activator NlpD	-
QQE96_RS18570 (QQE96_18625)	-	2842005..2842631 (-)	627	WP_168523348.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
QQE96_RS18575 (QQE96_18630)	surE	2842631..2843377 (-)	747	WP_168523350.1	5'/3'-nucleotidase SurE	-
QQE96_RS18580 (QQE96_18635)	truD	2843390..2844433 (-)	1044	WP_168523352.1	tRNA pseudouridine(13) synthase TruD	-
QQE96_RS18585 (QQE96_18640)	ispF	2844497..2844973 (-)	477	WP_053311368.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QQE96_RS18590 (QQE96_18645)	ispD	2845001..2845699 (-)	699	WP_168523354.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
QQE96_RS18595 (QQE96_18650)	ftsB	2845700..2845981 (-)	282	WP_168523356.1	cell division protein FtsB	-

Sequence

Protein

• Length: 332 a.a.
• Molecular weight: 38149.17 Da
• Isoelectric Point: 4.6445

>NTDB_id=878122 QQE96_RS18560 WP_168523346.1 2839997..2840995(-) (rpoS) [Vibrio aestuarianus subsp. francensis strain LC_Sco]
MSISNAVTKVEEFEDQDVMDTVEVTEELTTTNKKASRAQTEDVKEEFDASTKTLDATQMYLGEIGFSPLLTAEEEVLYAR
RALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQ
TRTIRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAFQLDKPVDDVSKMLRLNERISSVDTPIGGDGDKALLDIIPDA
NNSDPEISTQDDDIRNSLINWLNELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVKQG
LNMESLFNIEND

Nucleotide

• Length: 999 bp

>NTDB_id=878122 QQE96_RS18560 WP_168523346.1 2839997..2840995(-) (rpoS) [Vibrio aestuarianus subsp. francensis strain LC_Sco]
ATGAGCATCAGCAATGCAGTAACGAAAGTTGAAGAGTTTGAAGACCAAGATGTAATGGATACAGTCGAGGTTACAGAAGA
GCTCACTACCACCAACAAGAAAGCCAGTCGTGCTCAAACTGAAGATGTAAAAGAGGAGTTTGATGCTTCAACTAAAACCT
TAGATGCGACACAAATGTATCTAGGCGAAATTGGTTTTTCTCCTTTGTTAACCGCCGAAGAAGAAGTGCTTTATGCTCGT
CGCGCATTGAGGGGTGATGAAGCTGCTCGTAAGCGAATGATAGAAAGCAACTTGCGCTTAGTGGTGAAAATTTCACGCCG
TTATAGTAATCGTGGCCTAGCCCTACTCGATCTTATTGAAGAAGGGAATTTAGGTTTGATCCGTGCGGTGGAAAAATTTG
ACCCAGAACGCGGTTTTAGATTCTCAACTTATGCTACGTGGTGGATCCGTCAAACCATTGAGCGTGCGTTGATGAACCAA
ACTCGTACTATACGTCTTCCTATTCACGTGGTGAAAGAGCTTAATATTTATCTCCGTACCGCACGTGAATTGTCACAGAA
ACTTGACCACGAACCGACAGCGGAAGAGATCGCTTTTCAGTTGGATAAGCCGGTCGATGATGTCAGTAAAATGCTTCGCC
TCAATGAGCGTATTAGCTCAGTAGATACACCGATTGGTGGTGATGGCGATAAGGCACTATTGGATATCATTCCAGATGCA
AACAATTCTGATCCTGAAATCTCTACGCAAGATGATGATATTCGAAACTCATTGATTAATTGGCTCAATGAGCTCAATCC
AAAACAAAAAGAAGTATTGGCACGTCGTTTTGGTCTATTAGGTTATGAGCCATCAACATTGGAAGAAGTGGGCCGCGAGA
TTAACCTAACGCGTGAACGGGTTCGCCAAATTCAAGTGGAAGGATTACGTCGTTTAAGAGAGATCCTTGTTAAACAAGGT
CTCAACATGGAGTCGTTGTTTAACATTGAAAATGATTAG

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (173-246)

• Sigma-70 region 2 (Sigma70_r2) (93-162)

• Sigma-70, region 4 (Sigma70_r4) (261-314)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (55-88)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	86.228	100	0.867