Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   QQE96_RS18420 Genome accession   NZ_CP133987
Coordinates   2809010..2809528 (-) Length   172 a.a.
NCBI ID   WP_053311347.1    Uniprot ID   -
Organism   Vibrio aestuarianus subsp. francensis strain LC_Sco     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2804010..2814528
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQE96_RS18395 (QQE96_18450) rimM 2804033..2804587 (-) 555 WP_053311342.1 ribosome maturation factor RimM -
  QQE96_RS18400 (QQE96_18455) rpsP 2804617..2804865 (-) 249 WP_168523325.1 30S ribosomal protein S16 -
  QQE96_RS18405 (QQE96_18460) ffh 2805079..2806461 (-) 1383 WP_053311344.1 signal recognition particle protein -
  QQE96_RS18410 (QQE96_18465) - 2806762..2807556 (+) 795 WP_168523327.1 inner membrane protein YpjD -
  QQE96_RS18415 (QQE96_18470) - 2807648..2808919 (+) 1272 WP_168523329.1 HlyC/CorC family transporter -
  QQE96_RS18420 (QQE96_18475) luxS 2809010..2809528 (-) 519 WP_053311347.1 S-ribosylhomocysteine lyase Regulator
  QQE96_RS18425 (QQE96_18480) - 2809546..2810151 (-) 606 WP_053311348.1 hypothetical protein -
  QQE96_RS18430 (QQE96_18485) gshA 2810153..2811718 (-) 1566 WP_168523331.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18943.83 Da        Isoelectric Point: 5.0066

>NTDB_id=878119 QQE96_RS18420 WP_053311347.1 2809010..2809528(-) (luxS) [Vibrio aestuarianus subsp. francensis strain LC_Sco]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRAHLNGRDVEIIDISP
MGCRTGFYMSLIGTPTEAQVAQAWLAAMQDVLKVESQDKIPELNEYQCGTASMHSLIEAKEIANAIIAAGISVNKNDELA
LPESMLKELKVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=878119 QQE96_RS18420 WP_053311347.1 2809010..2809528(-) (luxS) [Vibrio aestuarianus subsp. francensis strain LC_Sco]
ATGCCACTACTCGATAGTTTTACCGTTGATCATACACGAATGAATGCACCGGCTGTACGCGTGGCGAAAACCATGCAAAC
CCCTAAAGGGGATACGATCACCGTGTTTGATCTTCGTTTTACGGCACCGAATAAGGATATTCTTTCAGAGAAAGGTATTC
ATACTTTAGAGCACCTATACGCAGGTTTCATGCGTGCGCATTTGAATGGTCGTGATGTTGAGATTATCGATATTTCACCG
ATGGGCTGCCGTACCGGTTTTTACATGAGCTTGATTGGCACGCCAACAGAAGCACAGGTTGCGCAAGCGTGGTTGGCAGC
GATGCAAGATGTACTTAAAGTCGAAAGCCAAGACAAAATACCAGAGCTCAACGAATATCAATGTGGTACCGCATCAATGC
ACTCACTGATTGAAGCGAAAGAAATTGCTAATGCAATTATTGCTGCTGGTATTTCAGTGAATAAAAATGATGAGTTAGCA
TTGCCCGAATCAATGCTAAAAGAACTTAAAGTCGATTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

90.058

99.419

0.895