Detailed information NTG0878114

Bioinformatically predicted

Overview

• Name: chiS
• Type: Regulator
• Locus tag: QQE96_RS18115
• Genome accession: NZ_CP133987
• Coordinates: 2731993..2735379 (+)
• Length: 1128 a.a.
• NCBI ID: WP_168523256.1
• Uniprot ID: -
• Organism: Vibrio aestuarianus subsp. francensis strain LC_Sco
• Function: chitin sensor (predicted from homology) Competence regulation

Genomic Context

Location: 2726993..2740379

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QQE96_RS18095 (QQE96_18150)	erpA	2727262..2727603 (-)	342	WP_053311281.1	iron-sulfur cluster insertion protein ErpA	-
QQE96_RS18100 (QQE96_18155)	hemL	2728046..2729338 (+)	1293	WP_168523252.1	glutamate-1-semialdehyde 2,1-aminomutase	-
QQE96_RS18105 (QQE96_18160)	-	2729599..2730684 (+)	1086	WP_168523254.1	AI-2E family transporter	-
QQE96_RS18110 (QQE96_18165)	rsmC	2730760..2731785 (+)	1026	WP_053311285.1	16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC	-
QQE96_RS18115 (QQE96_18170)	chiS	2731993..2735379 (+)	3387	WP_168523256.1	response regulator	Regulator
QQE96_RS18120 (QQE96_18175)	-	2736280..2737953 (+)	1674	WP_168523259.1	ABC transporter substrate-binding protein	-
QQE96_RS18125 (QQE96_18180)	-	2738121..2739107 (+)	987	WP_168523261.1	ABC transporter permease	-
QQE96_RS18130 (QQE96_18185)	-	2739110..2740144 (+)	1035	WP_053311289.1	ABC transporter permease	-

Sequence

Protein

• Length: 1128 a.a.
• Molecular weight: 127925.62 Da
• Isoelectric Point: 6.3565

>NTDB_id=878114 QQE96_RS18115 WP_168523256.1 2731993..2735379(+) (chiS) [Vibrio aestuarianus subsp. francensis strain LC_Sco]
MFRFSRKQKFKRLQNTLMLAFLVLSITPLTVMAIFFLQSHSQDLQEQSTSHLLSVRDNKQQQLFDYFAAKESEVMGFVRS
ELAYASGGRFYGLVNAFQRLGPDIKQAREHAQQRYIPGSGDQIKTSILPQSSSYVGSERYRLLHKRYHWAYLELLKRSDF
DDILLVDIAGDVVYSVYKYDNYGTNLLTGKYKDSNIGKTFRRLTQEVNEHHKNNGEYTPIIVSDFSPQDGKQIAWLGAPI
IQQGYLHSYAMFRLPNNGITKLVADTNKTSQIRTLLVGQDHLSRTLEYEQVEIDKSQKVINQALSGISSVGTYTNTLDEK
TIAAYTPIITTGLQWALVVELPEKEAYARVHQLEKLFIFAMLTAIILVVIASHYLSNFITSPLLKLTWAAEKVSAGDLDE
NVINTERKDEIGRLAVSFERMQRSIREKMQLIKSQNKELESNIQLIRKQNEELHLANKLKDEFLATTSHELRTPLHGMVG
IAEALVSGANGPITADHRYQLGIIISSGQRLANLVDDLLDYHKMRYGSLDINRCAVDLSSATRLVLELSSHLLGKKPIRI
INQVTDECVWVSADPQRLEQVLYNLIGNAIKYTTEGKIVISANVVDDKIRVQVVDTGQGIPAEQLEHIFEPLIQAGQDAS
RYRQGAGLGLSISRQLIELMHGTLYVSSQPMVGTTFSFTLPIASDQEIQFASHIEPRHFQAPEIAEIEQPEASTLPDNNS
GPLLLVADDEPVNLRVLDSFLRLEGYQVRTVKDGNEVLAAVEQQKPELLLLDIMMPGLSGYQVCEKLREQYDHAELPIIM
LTALNQTDDRVRGFDAGANDYLSKPFNKHELAARIVAHLSASKAEQRRIENKQLQQELKHRAMVEASLLETQGRLLEQLE
SAPEAIICIRDDHKVRFANEAAARLFRRSQEQLKRSNADELIAPKYLVVDQEHYCGNIDIYVDDTRQHMSADILRLPEGS
GLQAMYIFNVGGNINAARINNLETAIEALSSYAFEGDREKLQQLKELGGEFTRIADKVSGDNQSKQDLMREVLVEAMTCA
LDYWERVTSQSKFTFAEQSGLWRVYLDRSTLQTRTLDKYLRIETLPKTPRWRTVLNSLDYILEHCQEQGPERAHIETQRD
KLQKLLTS

Nucleotide

• Length: 3387 bp

>NTDB_id=878114 QQE96_RS18115 WP_168523256.1 2731993..2735379(+) (chiS) [Vibrio aestuarianus subsp. francensis strain LC_Sco]
ATGTTTAGGTTCTCTCGTAAGCAAAAATTTAAACGCCTGCAAAATACATTGATGCTGGCTTTTCTTGTACTAAGTATCAC
CCCTTTGACGGTGATGGCCATCTTTTTTCTCCAATCACACAGTCAAGACCTGCAAGAACAAAGCACCTCTCACTTACTTT
CCGTTCGTGATAATAAGCAGCAGCAATTATTCGACTACTTCGCGGCCAAAGAATCGGAAGTGATGGGCTTTGTTCGCTCA
GAACTTGCCTATGCCAGCGGTGGGCGATTTTACGGTTTAGTTAATGCATTTCAAAGACTTGGACCTGACATCAAACAAGC
ACGAGAACATGCACAGCAGCGCTACATCCCAGGTTCTGGCGATCAAATAAAAACTTCAATTTTGCCTCAATCAAGTAGTT
ATGTGGGCAGTGAAAGATATCGTTTGTTGCATAAACGATATCACTGGGCTTATTTAGAATTACTAAAACGATCGGATTTT
GATGATATTTTATTAGTCGACATTGCTGGTGATGTGGTTTATTCAGTCTATAAATATGATAACTACGGAACAAACCTACT
CACCGGGAAATATAAAGACTCCAATATAGGAAAAACTTTCCGTCGTTTGACACAGGAAGTCAACGAGCATCATAAAAATA
ATGGTGAATATACTCCGATCATCGTTTCAGATTTTTCACCACAAGATGGTAAGCAAATCGCGTGGCTAGGAGCACCTATC
ATTCAACAAGGTTATCTGCACAGTTATGCCATGTTCCGTTTGCCAAATAATGGCATTACAAAACTGGTGGCAGATACCAA
CAAAACCTCACAAATAAGAACCTTACTGGTTGGTCAAGATCATCTATCCCGCACCTTGGAATATGAGCAAGTAGAAATCG
ACAAAAGCCAAAAGGTCATTAACCAGGCGCTCTCAGGAATCAGTTCAGTTGGCACCTACACCAATACCTTGGATGAAAAA
ACCATCGCGGCCTACACTCCGATTATCACCACTGGCCTACAGTGGGCTTTAGTCGTTGAACTTCCAGAGAAAGAAGCTTA
CGCACGAGTCCACCAGCTAGAAAAACTGTTTATTTTTGCCATGCTGACAGCCATTATTTTAGTGGTCATCGCCTCTCACT
ACTTATCCAACTTCATTACGTCTCCACTATTGAAGCTGACATGGGCAGCCGAAAAAGTATCCGCAGGTGATCTGGATGAA
AACGTCATCAATACTGAACGCAAAGATGAGATCGGCCGTTTGGCGGTTAGCTTTGAACGCATGCAACGTTCTATTCGTGA
AAAAATGCAGTTGATCAAATCGCAAAACAAAGAACTTGAAAGCAATATCCAACTGATCCGCAAACAAAATGAAGAACTAC
ACTTAGCCAATAAATTAAAAGATGAATTTCTCGCGACCACCTCACACGAATTAAGAACACCTTTGCACGGCATGGTGGGG
ATTGCAGAAGCCTTAGTCTCTGGGGCCAATGGCCCGATTACGGCTGATCATCGTTACCAATTAGGCATTATCATCAGCAG
TGGACAACGCTTAGCAAACTTAGTTGATGACCTATTGGACTACCATAAAATGCGTTATGGCAGTTTGGATATCAACCGCT
GTGCTGTTGATCTCTCTAGCGCAACCCGTTTAGTGTTAGAGCTTTCAAGCCACCTACTGGGTAAAAAACCAATACGCATT
ATTAACCAAGTCACTGATGAATGTGTTTGGGTTTCAGCCGATCCACAAAGACTCGAGCAGGTACTCTATAACTTAATCGG
TAATGCGATTAAATATACGACTGAAGGTAAAATTGTTATTTCAGCCAATGTCGTCGATGACAAGATTCGTGTGCAAGTCG
TCGATACTGGGCAAGGAATTCCAGCAGAACAGCTTGAGCATATTTTTGAACCTCTTATTCAAGCAGGACAAGATGCAAGT
CGCTACCGTCAAGGTGCTGGACTTGGGCTTTCGATTAGCCGTCAACTGATTGAACTGATGCACGGTACGCTGTATGTCAG
CAGCCAGCCTATGGTAGGTACTACCTTTAGCTTTACCCTACCGATAGCCTCAGACCAAGAGATCCAATTTGCCAGTCATA
TAGAGCCGCGCCACTTCCAAGCACCTGAAATTGCAGAAATAGAGCAGCCAGAAGCGAGCACTCTCCCTGATAATAATTCT
GGTCCACTGCTTCTAGTCGCTGATGATGAACCCGTCAATTTACGAGTGTTAGACAGTTTCTTACGCTTAGAGGGCTATCA
AGTCCGCACAGTAAAAGATGGCAATGAAGTATTGGCGGCCGTTGAACAACAAAAACCAGAACTGTTGCTACTCGATATCA
TGATGCCAGGTCTTAGCGGTTATCAAGTTTGTGAAAAACTCAGAGAACAGTACGACCACGCTGAGCTGCCTATCATTATG
CTTACCGCATTAAATCAGACTGATGATCGTGTTCGTGGCTTTGATGCTGGTGCTAATGATTACCTATCAAAACCATTTAA
TAAACATGAATTAGCAGCTCGTATCGTGGCTCATCTATCTGCTAGTAAGGCAGAGCAGCGCCGCATCGAAAACAAACAAC
TACAGCAAGAACTTAAACATCGGGCCATGGTCGAAGCCAGCTTACTAGAAACACAAGGGCGCCTTCTTGAACAACTAGAG
TCAGCACCAGAGGCAATTATCTGCATTCGAGATGACCATAAAGTACGTTTTGCTAATGAGGCCGCCGCTAGGTTATTCAG
GCGCAGCCAGGAGCAGTTAAAACGCTCTAATGCAGATGAATTGATCGCACCAAAATACTTAGTTGTCGATCAAGAACACT
ATTGCGGCAATATCGATATTTATGTCGATGATACTCGTCAGCACATGTCTGCCGATATTCTACGATTACCAGAAGGCTCT
GGGCTGCAAGCTATGTATATTTTTAATGTTGGGGGAAACATTAACGCCGCTCGCATTAATAATCTGGAAACCGCCATCGA
AGCACTCTCGAGTTATGCTTTTGAAGGTGATAGAGAGAAACTTCAACAATTAAAAGAGCTCGGTGGGGAGTTTACCCGTA
TTGCAGACAAGGTATCGGGAGATAACCAATCAAAGCAAGATCTGATGCGTGAAGTCCTCGTAGAGGCCATGACTTGTGCT
TTAGATTACTGGGAGAGAGTGACTAGCCAAAGCAAGTTTACCTTCGCCGAACAAAGTGGCTTGTGGCGGGTGTATCTTGA
TAGAAGCACTCTGCAGACAAGGACATTAGATAAATACTTGCGAATAGAGACACTACCAAAAACCCCTCGTTGGCGGACAG
TTCTAAACTCTTTAGATTACATTTTAGAGCACTGCCAAGAGCAAGGACCGGAACGGGCTCATATCGAAACTCAGCGTGAC
AAACTACAAAAGCTGCTGACTAGCTAA

Domains

Predicted by InterproScan.

• PAS fold (PAS) (876-925)

• Response regulator receiver domain (Response_reg) (725-835)

• HAMP domain (HAMP) (375-427)

• His Kinase A (phospho-acceptor) domain (HisKA) (460-525)

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (574-682)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
chiS	Vibrio cholerae strain A1552	81.826	100	0.818