Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   QQE96_RS12365 Genome accession   NZ_CP133987
Coordinates   1485328..1486752 (-) Length   474 a.a.
NCBI ID   WP_168521831.1    Uniprot ID   -
Organism   Vibrio aestuarianus subsp. francensis strain LC_Sco     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1480328..1491752
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQE96_RS12340 (QQE96_12410) - 1480571..1481884 (-) 1314 WP_168521825.1 ferric reductase-like transmembrane domain-containing protein -
  QQE96_RS12345 (QQE96_12415) - 1482003..1482878 (-) 876 WP_168521827.1 AEC family transporter -
  QQE96_RS12350 (QQE96_12420) cdd 1483050..1483937 (-) 888 WP_053309368.1 cytidine deaminase -
  QQE96_RS12355 (QQE96_12425) - 1484147..1484827 (-) 681 WP_168521829.1 LrgB family protein -
  QQE96_RS12360 (QQE96_12430) - 1484827..1485192 (-) 366 WP_053309370.1 CidA/LrgA family protein -
  QQE96_RS12365 (QQE96_12435) sbcB 1485328..1486752 (-) 1425 WP_168521831.1 exodeoxyribonuclease I Machinery gene
  QQE96_RS12370 (QQE96_12440) - 1487186..1487869 (-) 684 WP_168521833.1 NAD(P)H-binding protein -
  QQE96_RS12375 (QQE96_12445) - 1487941..1488828 (-) 888 WP_168521016.1 IS982 family transposase -
  QQE96_RS12380 (QQE96_12450) - 1489159..1489959 (+) 801 WP_053309375.1 adenosylcobinamide-GDP ribazoletransferase -
  QQE96_RS12385 (QQE96_12455) cobU 1489959..1490507 (+) 549 WP_168521835.1 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase -
  QQE96_RS12390 (QQE96_12460) - 1490510..1491112 (+) 603 WP_053309377.1 histidine phosphatase family protein -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54567.00 Da        Isoelectric Point: 5.1595

>NTDB_id=878104 QQE96_RS12365 WP_168521831.1 1485328..1486752(-) (sbcB) [Vibrio aestuarianus subsp. francensis strain LC_Sco]
MRQEHTPTFFFFDYETWGVSPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQPPADYLPSPEAALITGITPQKAMSHGISEP
EFIAKIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQKGNSRWDLLDVMRACHALRPEGINWPENEDGFT
SFKLEHLSVANGIEHANAHDAMADVIATIELAKKVKAAQPKLFDYFFNMRHKRKLNDLVDIVNMMPLMHVSGMLGRECQY
TSWIVPIAWHPTNQNAVIVVDLAKNPQPLIDLNVEELQQRLYTKRDDLAPDELPVPIKLVHLNKCPILAPAKTLTAENAE
KIGIDRTVCLQNLAVIKQHPEIREKLVGLYSIEREYPANDDVDSQLYDGFFSPSDKAAMDIIRETDPVNLSALEISFSDK
RIEPLLFRYRARNYPLTLSDEEQQRWAAHCREYFENRIEEYSLNLENLVHTYESDEKKIAILKSVYHYVETITR

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=878104 QQE96_RS12365 WP_168521831.1 1485328..1486752(-) (sbcB) [Vibrio aestuarianus subsp. francensis strain LC_Sco]
ATGCGACAAGAGCACACGCCTACTTTCTTCTTTTTTGATTATGAAACTTGGGGAGTAAGCCCAGCAAAGGATCGCCCTAG
CCAATTTGCTGGTGTTCGCACCGACATGGATTTCAATATTATTGGCGAGCCGTTGGTTATCTATTGCCAACCTCCTGCTG
ATTACCTCCCCTCTCCAGAAGCGGCGCTTATTACTGGTATCACCCCACAAAAAGCGATGAGTCATGGTATTAGCGAGCCA
GAATTTATAGCTAAAATACACGCTGAGCTATCAACCCCTAATACCACCAGCCTTGGCTATAACAGCATTCGATTTGACGA
CGAAGTCACACGCTACACTTGCTACCGAAATTTTATTGATCCGTATGCATGGAGCTGGCAAAAAGGCAATTCACGTTGGG
ATTTACTTGATGTTATGCGTGCATGCCATGCATTACGTCCAGAGGGTATCAACTGGCCAGAAAATGAAGATGGGTTCACC
AGTTTTAAATTAGAGCATTTATCTGTCGCTAACGGTATCGAACACGCGAATGCTCATGATGCAATGGCCGATGTTATCGC
TACTATCGAACTTGCAAAGAAAGTCAAAGCCGCGCAGCCTAAGTTGTTTGATTACTTTTTCAATATGCGCCACAAACGTA
AACTCAATGACCTCGTTGATATCGTCAACATGATGCCACTGATGCACGTTTCTGGCATGCTCGGCCGTGAATGCCAATAC
ACCAGTTGGATCGTACCAATCGCCTGGCACCCCACTAACCAAAACGCGGTGATTGTGGTTGATCTTGCGAAAAACCCGCA
ACCATTGATAGACCTAAACGTCGAAGAGTTACAGCAACGCTTATACACAAAACGAGACGATCTTGCACCGGATGAGCTGC
CCGTACCAATCAAGCTGGTGCACCTTAATAAATGCCCAATTTTAGCACCGGCCAAAACGTTAACCGCGGAAAATGCAGAA
AAGATAGGGATTGATCGAACGGTATGTTTACAAAACTTAGCCGTGATTAAACAACACCCTGAAATCCGAGAAAAACTGGT
TGGCCTTTACAGTATCGAGCGAGAGTATCCGGCCAATGATGATGTCGATAGCCAGCTGTATGACGGATTCTTTTCGCCTT
CGGATAAAGCCGCTATGGATATTATCCGTGAGACCGACCCGGTAAATTTATCTGCTTTAGAGATTAGCTTTAGTGATAAA
CGGATTGAGCCCCTACTATTTCGTTATCGCGCGCGCAACTACCCTTTGACACTGAGCGATGAAGAACAACAGCGTTGGGC
TGCACATTGCCGTGAATATTTTGAAAATCGTATTGAAGAATATAGCCTCAATTTGGAAAACTTAGTTCATACCTATGAGA
GTGACGAAAAGAAAATCGCTATTTTAAAATCCGTTTACCATTACGTGGAAACTATTACCCGTTGA

Domains

Predicted by InterproScan.

Exonuclease (RNase_T)

(11-191)

Exonuclease C-terminal (Exonuc_X-T_C)

(210-470)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

81.607

99.789

0.814