Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   QQE96_RS00985 Genome accession   NZ_CP133986
Coordinates   193775..194962 (+) Length   395 a.a.
NCBI ID   WP_308214904.1    Uniprot ID   -
Organism   Vibrio aestuarianus subsp. francensis strain LC_Sco     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 188775..199962
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQE96_RS00970 (QQE96_00970) - 189600..190586 (-) 987 WP_053310649.1 CobW family GTP-binding protein -
  QQE96_RS00975 (QQE96_00975) clcA 191059..192456 (+) 1398 WP_168524588.1 H(+)/Cl(-) exchange transporter ClcA -
  QQE96_RS00980 (QQE96_00980) - 192622..193575 (+) 954 WP_168524587.1 TDT family transporter -
  QQE96_RS00985 (QQE96_00985) cqsA 193775..194962 (+) 1188 WP_308214904.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  QQE96_RS00990 (QQE96_00990) - 195022..197074 (-) 2053 Protein_196 response regulator -

Sequence

Protein


Download         Length: 395 a.a.        Molecular weight: 44019.33 Da        Isoelectric Point: 6.6786

>NTDB_id=878088 QQE96_RS00985 WP_308214904.1 193775..194962(+) (cqsA) [Vibrio aestuarianus subsp. francensis strain LC_Sco]
MTMNTNKWKCNLPTFIQSRIDYFINDLINSNDNGKHLVLGKRPIKNDIILQSNDYLSLADHPLIKARLKNAIDKSHDSIF
MSAIYLQDEETKPSLETQLAQFIGFDSCLLSQSGWNANIGLLQAICAPQSNVYIDFFAHMSMWEGARYANANIHPFMHNN
CEHLAKLVARHGPGLIVVDSIYSTIGTIAPLEELVAIAKQNDCAILVDESHSLGTHGEQGSGLVSQLGLTKEVDFITASL
AKTFAYRAGAIWANNNVNLCIPFVGYPAIFSSTILPYELEALHATLEIIKTADSKREHLHRCAQKLRSGLTEIGLKIRSQ
SQIIALETGDERNTEKVRDYLENNGIFGAVFCRPATPKNKNIIRLSLNSDITDTQIDRILTICALVKNDDNLYFK

Nucleotide


Download         Length: 1188 bp        

>NTDB_id=878088 QQE96_RS00985 WP_308214904.1 193775..194962(+) (cqsA) [Vibrio aestuarianus subsp. francensis strain LC_Sco]
ATAACAATGAACACAAACAAGTGGAAATGCAACCTGCCCACATTTATCCAGTCTAGAATTGACTATTTTATCAATGATTT
GATAAATAGCAATGATAATGGCAAACACCTCGTCCTAGGGAAGCGTCCTATTAAGAATGACATTATATTGCAAAGTAACG
ACTATTTAAGCCTTGCTGATCATCCATTGATTAAAGCACGGTTAAAGAATGCAATTGACAAAAGTCATGATAGCATTTTT
ATGTCTGCTATTTATCTTCAAGATGAAGAGACGAAACCTTCTCTAGAGACTCAACTAGCCCAATTTATTGGATTTGATAG
CTGCTTGTTATCTCAGTCAGGCTGGAATGCTAATATCGGGCTTTTACAAGCCATATGTGCACCACAAAGTAATGTTTATA
TTGATTTTTTCGCGCATATGTCGATGTGGGAAGGTGCTCGTTACGCGAATGCTAACATTCACCCTTTTATGCATAACAAC
TGTGAACACTTGGCGAAATTGGTTGCTCGTCATGGCCCTGGACTTATCGTCGTGGACTCCATATACAGTACCATTGGTAC
CATTGCACCATTAGAAGAGTTAGTTGCAATCGCTAAGCAAAACGATTGTGCCATTTTAGTCGATGAATCACATTCGCTAG
GTACTCATGGAGAACAAGGTTCAGGACTTGTCAGTCAACTTGGGTTAACGAAGGAGGTTGATTTTATTACCGCTAGCCTT
GCTAAAACTTTTGCCTATCGAGCGGGAGCAATTTGGGCAAATAATAACGTTAACCTGTGCATACCATTTGTCGGTTACCC
TGCTATTTTTAGCTCGACAATATTACCTTACGAACTCGAAGCATTACATGCGACATTAGAAATAATTAAAACTGCCGACT
CTAAAAGAGAGCATTTACATCGTTGCGCGCAAAAACTTCGTTCAGGATTAACTGAAATTGGCTTAAAAATCAGGAGTCAA
TCGCAAATCATTGCACTCGAAACTGGAGATGAAAGAAATACTGAAAAAGTCAGAGATTATTTAGAGAACAATGGAATATT
TGGTGCTGTATTTTGTCGTCCAGCAACACCAAAGAATAAGAATATTATTCGGCTATCACTAAATAGTGATATAACCGACA
CGCAAATAGATAGGATATTGACCATTTGTGCGTTGGTAAAAAATGATGATAATTTATATTTCAAATAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(46-380)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

68.217

97.975

0.668