Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   RIM75_RS07435 Genome accession   NZ_CP133957
Coordinates   1545285..1547087 (-) Length   600 a.a.
NCBI ID   WP_012679215.1    Uniprot ID   -
Organism   Streptococcus equi subsp. equi strain HT1112     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1540285..1552087
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIM75_RS07410 (RIM75_07410) prsA 1541366..1542367 (-) 1002 WP_012679220.1 peptidylprolyl isomerase PrsA -
  RIM75_RS07415 (RIM75_07415) - 1542430..1543137 (-) 708 WP_317582768.1 O-methyltransferase -
  RIM75_RS07420 (RIM75_07420) - 1543219..1543857 (-) 639 WP_012679218.1 HAD family phosphatase -
  RIM75_RS07425 (RIM75_07425) - 1543907..1544539 (-) 633 WP_317582769.1 HAD-IA family hydrolase -
  RIM75_RS07430 (RIM75_07430) - 1544529..1545086 (-) 558 WP_012679216.1 GNAT family N-acetyltransferase -
  RIM75_RS07435 (RIM75_07435) pepF 1545285..1547087 (-) 1803 WP_012679215.1 oligoendopeptidase F Regulator
  RIM75_RS07440 (RIM75_07440) - 1547077..1548054 (-) 978 WP_317582770.1 competence protein CoiA family protein -
  RIM75_RS07445 (RIM75_07445) - 1548146..1548862 (-) 717 WP_012515300.1 pseudouridine synthase -
  RIM75_RS07450 (RIM75_07450) nagB 1549034..1549738 (-) 705 WP_012679214.1 glucosamine-6-phosphate deaminase -
  RIM75_RS07455 (RIM75_07455) queA 1550006..1551034 (+) 1029 WP_317582771.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69116.85 Da        Isoelectric Point: 4.6328

>NTDB_id=877983 RIM75_RS07435 WP_012679215.1 1545285..1547087(-) (pepF) [Streptococcus equi subsp. equi strain HT1112]
MTDNRSHLEEKYTWDLSTIFATDAAWETEADSLLAAIEAARQQAGHLLDSSSSLLDITELHLELARRVEKVYVYASMKND
QDTTVAKYQEYQAKASGIYAKFSEAFSFYEPEFMALSQEAYQAFLAETPELTVYDHFFDKLFKTREHVLSQAEEELLAGA
QEIFNGAEETFSILDNADIAFPIVTNDKGEEVELTHGNFISLMESKDRKVRRAAYEAMYSTYEQFQHTYAKTLQTNVKVQ
NYKARVHKYASARQAAMSANFIPEAVYDTLLENVNKHLPLLHRYLKLRQEVLGLDDLKMYDVYTPLSETDLAIGYDEALE
KAEKVLAVFGQDYSERVHRAFTERWIDVHVNKGKRSGAYSGGSYDTNAFMLLNWQDTLDNLYTLVHETGHSLHSTFTRET
QPYVYGDYSIFLAEIASTTNENIMTEALLHEVQDDKERFAILNHYLDGFRGTVFRQTQFAEFEHAIHQADQNGEVLTSEY
LNNLYADLNEKYYGLKKEDNHFIQYEWARIPHFYYNYYVYQYATGFAAASYLADKIVHGTQEDIDHYLTYLKSGNSDYPL
EVIAKAGVDMAKGDYLEAAFRVFEERLTELEDLVARGAHL

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=877983 RIM75_RS07435 WP_012679215.1 1545285..1547087(-) (pepF) [Streptococcus equi subsp. equi strain HT1112]
ATGACAGATAATCGTAGTCATCTAGAGGAAAAGTACACTTGGGATTTAAGCACTATTTTTGCAACAGACGCAGCTTGGGA
GACAGAGGCAGATAGTCTGCTGGCAGCAATTGAGGCTGCAAGGCAGCAGGCTGGGCATTTGTTGGATTCAAGCAGCAGTC
TCTTAGATATCACAGAGCTGCATTTGGAGCTGGCTCGTCGTGTTGAAAAGGTTTATGTTTATGCTAGCATGAAAAATGAT
CAGGATACGACAGTTGCCAAGTATCAAGAATATCAAGCTAAGGCCTCTGGTATTTATGCTAAATTTAGTGAAGCCTTTTC
ATTCTATGAGCCAGAATTTATGGCCTTAAGTCAGGAAGCCTACCAAGCCTTCTTAGCTGAGACACCGGAGCTAACAGTCT
ATGACCATTTCTTTGATAAATTGTTCAAGACGCGTGAGCATGTCCTTAGTCAGGCTGAGGAGGAGCTATTAGCAGGGGCA
CAAGAAATCTTTAATGGTGCTGAGGAGACCTTTAGTATCCTAGATAATGCCGACATTGCTTTTCCTATTGTGACAAATGA
TAAGGGAGAAGAGGTTGAGCTAACACATGGTAATTTCATTAGCTTGATGGAATCGAAAGACCGCAAGGTGCGTAGGGCTG
CCTATGAAGCCATGTATAGTACTTATGAGCAATTCCAGCACACCTATGCTAAAACCCTGCAAACCAATGTAAAGGTGCAA
AATTATAAGGCACGTGTTCACAAATATGCTTCAGCCCGTCAGGCAGCGATGTCAGCCAACTTTATCCCAGAGGCTGTTTA
CGATACCCTACTAGAAAACGTTAATAAGCATTTGCCGCTGCTTCATCGTTATTTGAAGCTACGTCAAGAGGTGCTTGGTT
TAGATGATCTAAAGATGTATGATGTTTATACTCCTTTATCTGAGACAGATCTTGCTATCGGCTATGATGAGGCCTTGGAA
AAAGCAGAGAAGGTTTTGGCTGTTTTTGGCCAGGATTATTCAGAGCGTGTGCATCGTGCCTTTACAGAGCGTTGGATTGA
TGTGCATGTCAATAAGGGCAAACGCTCAGGAGCTTACTCTGGTGGTTCCTATGATACCAATGCCTTTATGCTCTTAAATT
GGCAGGACACGCTTGATAACCTCTATACGCTAGTGCATGAGACAGGCCATAGCCTGCACTCAACCTTTACGCGTGAAACA
CAGCCTTACGTGTATGGAGATTACAGCATTTTCTTAGCTGAGATTGCTTCAACCACTAATGAAAATATCATGACTGAGGC
CTTGTTACATGAGGTGCAGGATGATAAGGAGCGCTTTGCTATTTTGAATCATTACCTAGATGGTTTTCGTGGAACGGTTT
TTCGTCAAACACAGTTTGCTGAGTTTGAGCACGCTATTCATCAGGCGGATCAAAATGGCGAGGTGTTAACAAGTGAATAC
CTCAATAATCTCTATGCTGATTTAAACGAAAAATATTATGGCTTAAAAAAAGAGGACAACCATTTTATCCAGTATGAGTG
GGCTCGCATTCCGCATTTCTATTACAACTACTATGTCTATCAATATGCAACAGGCTTTGCTGCAGCCAGCTACTTGGCTG
ATAAGATCGTGCATGGTACTCAAGAGGATATTGATCACTACTTGACCTATCTGAAGTCTGGAAATTCAGATTATCCGCTT
GAGGTGATTGCCAAGGCTGGTGTTGATATGGCTAAGGGTGATTACCTAGAAGCAGCCTTTAGGGTCTTTGAAGAGCGTTT
GACAGAGCTAGAGGACTTAGTGGCAAGAGGGGCACATCTCTAA

Domains

Predicted by InterProScan.

Peptidase family M3 (Peptidase_M3)

(202-581)

Oligopeptidase F (Peptidase_M3_N)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

72.833

100

0.728