Detailed information NTG0877938

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: RIM73_RS09480
• Genome accession: NZ_CP133956
• Coordinates: 1977740..1979101 (-)
• Length: 453 a.a.
• NCBI ID: WP_043030409.1
• Uniprot ID: -
• Organism: Streptococcus equi subsp. equi strain HTP232
• Function: homologous recombination (predicted from homology) Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IScluster/Tn	1976298..1977724	1977740..1979101	flank	16

Gene organization within MGE regions

Location: 1976298..1979101

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RIM73_RS09480 (RIM73_09480)	radA	1977740..1979101 (-)	1362	WP_043030409.1	DNA repair protein RadA	Machinery gene

Sequence

Protein

• Length: 453 a.a.
• Molecular weight: 49374.80 Da
• Isoelectric Point: 7.0274

>NTDB_id=877938 RIM73_RS09480 WP_043030409.1 1977740..1979101(-) (radA) [Streptococcus equi subsp. equi strain HTP232]
MAKKKARFICGECGYQSPKYLGRCPNCSAWSSFVEETEVKDVKNARISLTGEKSKPIKLKHINGVRYQRIQTEMNEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSIQLADKGTVLYVSGEESAEQIKMRSDRLGQTDNDFYLYAETNMQAIRAEIE
AIQPDFLIIDSIQTIMSPEISGVQGSVSQVREVTAELLQLAKSNHIATFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFDMQSGGLVEVLNPSQVFLEERLDGATGSAVVVTMEGSRPILAEVQALVTPTVFGNAR
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEKPTNPQEAFLGEIGLTGDIR
RVTRIEQRINEAAKLGFTKLYAPKSSLQGIDLPKGIEVVGVTTVGEVLKAVFT

Nucleotide

• Length: 1362 bp

>NTDB_id=877938 RIM73_RS09480 WP_043030409.1 1977740..1979101(-) (radA) [Streptococcus equi subsp. equi strain HTP232]
ATAGCTAAGAAAAAGGCGAGGTTTATCTGTGGAGAATGTGGCTATCAGTCACCCAAATATCTGGGGCGCTGCCCTAATTG
CTCTGCCTGGTCTTCCTTTGTAGAGGAGACAGAGGTCAAGGACGTCAAAAATGCCCGTATTAGCCTGACTGGAGAAAAAA
GTAAGCCCATCAAGCTAAAGCATATCAATGGCGTTCGCTACCAGCGTATCCAGACAGAGATGAATGAGTTCAATCGTGTG
CTGGGCGGTGGTGTTGTGCCGGGGAGCTTGGTTTTGATTGGTGGTGATCCTGGTATTGGTAAGTCAACGCTGCTCTTGCA
GGTTTCTATCCAGCTTGCGGATAAGGGAACTGTTTTATATGTCTCTGGAGAGGAATCGGCAGAGCAGATCAAGATGCGCA
GTGATCGTTTGGGACAGACCGACAATGATTTTTACCTCTATGCGGAGACCAATATGCAGGCTATTCGAGCAGAGATTGAA
GCCATTCAGCCGGATTTTTTGATTATTGATTCTATTCAGACGATCATGAGTCCGGAGATTTCGGGTGTTCAGGGCTCGGT
CAGTCAGGTTCGAGAGGTCACTGCTGAGCTGCTCCAGCTAGCTAAGTCTAATCATATTGCAACCTTTATTGTAGGACATG
TCACCAAGGAGGGCACCCTAGCAGGGCCTCGCATGCTGGAGCATATGGTTGATACGGTCCTTTATTTTGAGGGTGAGAGG
CATCATACCTTTCGTATCTTGCGAGCGGTTAAAAATCGTTTTGGCTCAACCAATGAGATTGGTATTTTTGACATGCAATC
AGGTGGGCTAGTGGAGGTCCTCAATCCCAGTCAGGTGTTCTTAGAGGAACGATTAGACGGCGCAACAGGCTCTGCTGTGG
TTGTCACCATGGAGGGGAGCAGACCGATTTTAGCTGAGGTGCAGGCCTTGGTGACACCGACTGTTTTTGGTAATGCTAGA
CGAACGACAACTGGGTTGGACTTTAATCGCGTCAGTCTGATTATGGCTGTCTTGGAAAAGCGATGTGGGCTGCTGCTACA
AAATCAAGATGCCTACCTCAAGTCAGCAGGCGGTGTGAAGCTAGATGAGCCTGCTATTGACTTGGCAGTTGCTGTGGCCA
TTGCCTCTAGCTACAAGGAAAAACCAACCAACCCTCAGGAGGCCTTTTTAGGAGAGATTGGCTTGACTGGTGATATTCGG
CGTGTGACCCGTATTGAGCAGCGGATTAATGAAGCCGCTAAGCTTGGCTTTACCAAGCTTTACGCTCCGAAAAGCTCATT
GCAGGGGATTGATCTGCCAAAAGGGATTGAGGTTGTTGGTGTGACGACAGTAGGAGAGGTCTTAAAGGCTGTCTTTACTT
AG

Domains

Predicted by InterproScan.

• AAA domain (AAA_25) (61-218)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

• Subunit ChlI of Mg-chelatase (ChlI) (360-425)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Streptococcus pneumoniae Rx1	84.513	99.779	0.843
radA	Streptococcus pneumoniae D39	84.513	99.779	0.843
radA	Streptococcus pneumoniae R6	84.513	99.779	0.843
radA	Streptococcus pneumoniae TIGR4	84.513	99.779	0.843
radA	Streptococcus mitis NCTC 12261	84.071	99.779	0.839
radA	Streptococcus mitis SK321	84.071	99.779	0.839
radA	Bacillus subtilis subsp. subtilis str. 168	61.369	100	0.614