Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   RIM73_RS08030 Genome accession   NZ_CP133956
Coordinates   1661878..1662915 (-) Length   345 a.a.
NCBI ID   WP_012679161.1    Uniprot ID   C0MBZ2
Organism   Streptococcus equi subsp. equi strain HTP232     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1656878..1667915
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIM73_RS08010 (RIM73_08010) - 1657198..1657431 (-) 234 WP_012515231.1 YqgQ family protein -
  RIM73_RS08015 (RIM73_08015) - 1657804..1658334 (-) 531 WP_012515230.1 Dps family protein -
  RIM73_RS08020 (RIM73_08020) rlmN 1659616..1660698 (-) 1083 WP_012679163.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  RIM73_RS08025 (RIM73_08025) - 1660702..1661316 (-) 615 WP_012679162.1 YutD family protein -
  RIM73_RS08030 (RIM73_08030) sepM 1661878..1662915 (-) 1038 WP_012679161.1 SepM family pheromone-processing serine protease Regulator
  RIM73_RS08035 (RIM73_08035) coaD 1662893..1663393 (-) 501 WP_012679160.1 pantetheine-phosphate adenylyltransferase -
  RIM73_RS08040 (RIM73_08040) rsmD 1663383..1663922 (-) 540 WP_012679159.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  RIM73_RS08045 (RIM73_08045) asnA 1664094..1665086 (-) 993 WP_012515219.1 aspartate--ammonia ligase -
  RIM73_RS08050 (RIM73_08050) arcC 1665306..1666256 (-) 951 WP_012679157.1 carbamate kinase -
  RIM73_RS08055 (RIM73_08055) - 1666274..1667605 (-) 1332 WP_012679156.1 dipeptidase -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 37438.09 Da        Isoelectric Point: 9.4223

>NTDB_id=877932 RIM73_RS08030 WP_012679161.1 1661878..1662915(-) (sepM) [Streptococcus equi subsp. equi strain HTP232]
MKTIKKIKWWLIGFVALLFLLLTLFFPLPYYIEMPGGAYDIRSVLTVNGKEDKEKGAYQFVVVSLSRATLAKLLYAWLTP
FTEISTMEDTTGGYSDADYLRINRFYMETSQNSAVYQALTLAGKEVSFDYKGVYVLDVSKDSSFKGVLHLADTVTGVNGK
TFTTSADLIDYVSHLTLGDEVQVQFTTAGESKTEKGKIIKLKNGKNGIGITLTDHTQVISGDEVDFSTGGVGGPSAGLMF
TLDIYDQINHEDLRKGRVIAGTGTIGKDGKVGDIGGAGLKVAAAAAAGADIFFVPNNPVHKDVKKANPKAISNYEEAKKA
AKRLKTAMKIIPVKTVQDAISYLKK

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=877932 RIM73_RS08030 WP_012679161.1 1661878..1662915(-) (sepM) [Streptococcus equi subsp. equi strain HTP232]
ATGAAAACAATAAAAAAAATTAAATGGTGGCTGATTGGCTTTGTTGCCTTGCTTTTTCTACTGTTGACACTGTTTTTCCC
CTTGCCTTATTATATTGAAATGCCAGGTGGAGCCTATGATATTCGCTCGGTATTGACTGTCAATGGCAAAGAGGATAAGG
AAAAGGGAGCTTATCAGTTTGTTGTAGTGAGCCTCAGTCGGGCCACCTTGGCTAAATTGCTCTATGCTTGGCTAACGCCT
TTCACTGAGATTAGCACCATGGAAGATACTACTGGTGGCTATAGCGATGCTGACTACCTGCGAATTAATCGCTTTTATAT
GGAAACCTCTCAAAACAGCGCTGTTTATCAGGCCCTTACTCTAGCAGGCAAGGAGGTAAGCTTTGATTATAAGGGTGTTT
ATGTCTTAGACGTCAGCAAGGATTCTAGCTTTAAAGGTGTGCTGCACCTAGCAGATACAGTGACAGGTGTCAATGGTAAA
ACATTTACAACGTCTGCCGATCTGATTGATTATGTTTCTCATTTGACCTTGGGAGATGAGGTGCAGGTACAATTTACAAC
CGCTGGTGAGTCAAAGACTGAAAAAGGAAAGATTATTAAGCTTAAAAACGGTAAAAATGGGATTGGCATTACCCTGACAG
ACCACACACAGGTCATTTCTGGTGATGAGGTCGACTTTAGCACTGGAGGTGTGGGTGGACCAAGTGCAGGCTTGATGTTT
ACTCTTGATATTTATGATCAAATCAATCACGAAGACTTGCGCAAGGGACGTGTGATTGCTGGTACAGGAACCATTGGCAA
GGATGGAAAAGTTGGAGATATTGGCGGGGCGGGCCTAAAGGTGGCTGCCGCCGCCGCTGCTGGTGCTGATATTTTCTTTG
TTCCAAATAATCCTGTGCATAAGGACGTCAAAAAAGCAAATCCTAAGGCTATTAGCAATTACGAGGAGGCTAAAAAAGCA
GCTAAACGACTAAAGACAGCAATGAAAATTATTCCTGTGAAAACCGTTCAAGATGCTATAAGCTACCTTAAAAAATAG

Domains

Predicted by InterproScan.

PDZ domain (PDZ_2)

(130-193)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(233-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C0MBZ2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

69.855

100

0.699