Detailed information NTG0877894

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: RIM73_RS00770
• Genome accession: NZ_CP133956
• Coordinates: 136126..138567 (+)
• Length: 813 a.a.
• NCBI ID: WP_317582881.1
• Uniprot ID: -
• Organism: Streptococcus equi subsp. equi strain HTP232
• Function: degradation of ComX (predicted from homology) Competence regulation

Genomic Context

Location: 131126..143567

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RIM73_RS00740 (RIM73_00740)	rpsB	131317..132087 (-)	771	WP_012677249.1	30S ribosomal protein S2	-
RIM73_RS00745 (RIM73_00745)	ahpF	132548..134080 (-)	1533	WP_012677250.1	alkyl hydroperoxide reductase subunit F	-
RIM73_RS00750 (RIM73_00750)	ahpC	134101..134661 (-)	561	WP_012678828.1	alkyl hydroperoxide reductase subunit C	-
RIM73_RS00760 (RIM73_00760)	-	135292..135495 (+)	204	WP_012514799.1	cold-shock protein	-
RIM73_RS00765 (RIM73_00765)	-	135665..136126 (+)	462	WP_012678891.1	CtsR family transcriptional regulator	-
RIM73_RS00770 (RIM73_00770)	clpC	136126..138567 (+)	2442	WP_317582881.1	ATP-dependent Clp protease ATP-binding subunit	Regulator
RIM73_RS00775 (RIM73_00775)	-	138915..139060 (-)	146	Protein_117	putative holin-like toxin	-
RIM73_RS00780 (RIM73_00780)	-	139340..139774 (+)	435	WP_012678893.1	hypothetical protein	-
RIM73_RS00785 (RIM73_00785)	-	139776..139907 (+)	132	WP_268257812.1	hypothetical protein	-
RIM73_RS00790 (RIM73_00790)	-	139995..140417 (+)	423	WP_317582882.1	hypothetical protein	-
RIM73_RS00795 (RIM73_00795)	-	140646..141077 (+)	432	WP_317582883.1	hypothetical protein	-
RIM73_RS00800 (RIM73_00800)	-	141079..142368 (+)	1290	WP_317582884.1	hypothetical protein	-
RIM73_RS00805 (RIM73_00805)	-	142350..142742 (+)	393	WP_317582885.1	hypothetical protein	-
RIM73_RS00810 (RIM73_00810)	-	142723..143013 (+)	291	WP_012514805.1	hypothetical protein	-

Sequence

Protein

• Length: 813 a.a.
• Molecular weight: 90353.26 Da
• Isoelectric Point: 6.3494

>NTDB_id=877894 RIM73_RS00770 WP_317582881.1 136126..138567(+) (clpC) [Streptococcus equi subsp. equi strain HTP232]
MMIYSLKMQDIFNQAQFQAERFDSPYLETWHILLAMVAVDHSLAAMVLSEFERKIRAEEYEAAAILAMGKSPKEVTSVQF
KPQSKALSEILAFAHAICQVINEHEVGSEHVLFAILLNPDIMASRLLELAGYRLKDSGKGEPRFADLRKAIELNAGYSKE
TIKAIHELRKPKKSKSVGTFSEMMKPQSTAGELSDFTRDLTEMARQGLLEPVIGREKEVSRMVQVLCRKTKNNPVLVGDA
GVGKTALAYGLAQRIANGAIPYELQDMRVLELDMMSVVAGTRFRGDFEERMNQLIDDIEADGKIILFVDELHTIMGSGSG
IDSTLDAANILKPALSRGTLHMVGATTQEEYQKHIEKDAALSRRFAKILIEEPSVEDAYQILLGLKPSYEQYHNVTISDT
AVHTAVKLARRYLTSKQLPDSAIDVLDEASAMVQSMVKKTQPDFITPLDQALLDGDMSKVSALLVKEDKQPKLKPTAVTE
DDMLHTLSKLSGIPLEKLTQADSKKYLNLEKELHKRVVGQEMAVSAIARAIRRNQSGIRTGRRPIGSFMFLGPTGVGKTE
LAKALAELLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVGYDEGGELTEKVRNKPYAVLLFDEVEKAHPDIFNILLQV
LDDGMLTDSRGCKVDFSNTIIIMTSNLGATALRDDKTVGFGAKAIGHDHQAMEKRILEELKKAYRPEFINRIDEKVVFHS
LTQENMRDVVKIMVKPLIAALAEKHISLKFQPSALKYLSEAGYDVEMGARPLRRTLQTEVEDRLAELMLSGELSSGQSLK
IGVSRGKLAFDIA

Nucleotide

• Length: 2442 bp

>NTDB_id=877894 RIM73_RS00770 WP_317582881.1 136126..138567(+) (clpC) [Streptococcus equi subsp. equi strain HTP232]
GTGATGATTTATTCATTAAAGATGCAAGACATTTTTAATCAGGCTCAATTTCAAGCAGAGCGCTTTGATAGTCCTTACCT
TGAGACCTGGCATATTTTATTAGCTATGGTAGCTGTTGACCATTCCTTAGCGGCCATGGTGTTAAGCGAATTTGAACGAA
AGATTAGGGCTGAAGAGTATGAGGCTGCTGCTATTTTAGCCATGGGAAAAAGTCCCAAAGAGGTGACTTCTGTCCAATTC
AAGCCACAATCCAAGGCCTTATCAGAAATACTAGCATTTGCTCATGCTATCTGTCAGGTTATCAATGAGCATGAGGTTGG
CTCAGAGCATGTACTCTTTGCTATTTTGCTCAATCCGGATATTATGGCCAGTCGTCTGTTAGAATTGGCAGGCTACAGGC
TCAAGGATTCTGGCAAGGGAGAGCCTAGGTTTGCGGATTTACGTAAGGCTATTGAGCTAAATGCCGGCTATAGCAAGGAA
ACTATTAAGGCGATTCATGAGTTGCGTAAGCCTAAAAAGAGTAAATCAGTAGGCACCTTTTCTGAAATGATGAAGCCACA
GAGTACAGCTGGTGAGCTATCAGACTTTACAAGAGACCTGACAGAGATGGCAAGACAGGGCTTATTAGAGCCAGTCATCG
GACGAGAAAAAGAGGTGTCACGTATGGTTCAGGTGCTTTGTCGTAAGACGAAAAATAATCCTGTTCTTGTTGGTGATGCG
GGTGTCGGAAAAACTGCTCTAGCTTATGGCTTAGCGCAGCGAATTGCTAATGGAGCCATTCCTTATGAATTACAAGACAT
GCGTGTCTTGGAGCTTGACATGATGAGTGTGGTTGCAGGTACCCGTTTTCGTGGGGATTTTGAAGAGCGCATGAATCAAC
TCATTGACGATATTGAAGCAGATGGTAAGATCATTTTGTTTGTCGATGAGCTACATACCATTATGGGATCAGGAAGTGGT
ATTGACAGCACACTTGATGCCGCTAATATTCTAAAGCCAGCCCTTTCTCGCGGTACCCTGCATATGGTTGGCGCTACAAC
TCAAGAGGAATATCAAAAGCACATTGAAAAGGACGCAGCCCTTTCTCGTCGCTTTGCCAAGATATTGATTGAGGAGCCTA
GTGTTGAGGACGCTTATCAGATTTTGCTTGGCTTGAAGCCTTCCTATGAACAGTACCATAATGTAACAATCTCTGATACA
GCTGTCCATACTGCTGTGAAGCTGGCTCGGCGCTATTTGACAAGTAAGCAGCTTCCAGACTCAGCGATTGATGTGCTTGA
TGAAGCCAGTGCGATGGTGCAAAGTATGGTTAAAAAGACGCAGCCTGACTTTATAACACCGCTTGATCAAGCCCTGCTTG
ATGGTGATATGAGCAAGGTGTCAGCCCTTTTAGTCAAAGAGGATAAGCAACCAAAGCTAAAACCAACAGCAGTTACTGAA
GATGATATGTTACACACCTTAAGCAAGCTATCAGGTATTCCCCTAGAAAAACTAACTCAGGCGGATAGTAAAAAATACCT
GAATCTGGAAAAGGAATTGCATAAGCGTGTTGTTGGTCAGGAAATGGCTGTTTCTGCTATTGCACGAGCCATTCGTCGTA
ACCAGTCAGGCATTCGCACAGGCAGGCGTCCGATTGGCTCCTTTATGTTTCTTGGTCCAACTGGTGTCGGAAAAACAGAG
CTAGCAAAGGCCTTGGCCGAATTACTCTTTGATGATGAGTCAGCCCTTATTCGTTTTGATATGTCTGAGTACATGGAAAA
ATTTGCAGCCTCCCGTCTTAATGGGGCTCCTCCTGGCTATGTTGGCTATGATGAGGGAGGAGAGCTAACCGAAAAGGTTA
GAAATAAGCCTTATGCCGTTCTTCTTTTTGATGAGGTTGAAAAGGCTCACCCAGACATCTTTAATATCCTGCTGCAGGTC
CTTGATGATGGTATGTTAACAGATAGTCGTGGATGTAAGGTTGATTTTTCAAACACGATTATTATCATGACGAGCAACCT
AGGAGCAACTGCTCTAAGAGATGATAAGACGGTTGGATTTGGCGCTAAAGCGATCGGTCATGACCATCAAGCAATGGAAA
AGCGTATTTTAGAGGAATTGAAAAAGGCTTATCGGCCTGAATTTATCAACAGAATTGATGAAAAGGTGGTCTTCCATAGC
CTAACACAGGAAAACATGCGTGATGTGGTGAAAATTATGGTTAAGCCGCTGATTGCAGCCTTGGCAGAAAAGCATATTAG
CCTTAAGTTCCAGCCATCAGCTCTCAAGTACTTGTCTGAAGCTGGTTACGATGTTGAAATGGGCGCTCGCCCACTTCGTC
GCACCTTGCAAACAGAGGTTGAGGACAGGTTAGCAGAATTAATGCTGTCAGGAGAGTTATCAAGCGGTCAAAGCCTCAAG
ATTGGTGTATCACGTGGAAAACTAGCTTTTGATATCGCTTAA

Domains

Predicted by InterproScan.

• ATPase family associated with various cellular activities (AAA) (AAA) (235-367)

• AAA lid domain (AAA_lid_9) (374-452)

• AAA domain (Cdc48 subfamily) (AAA_2) (543-714)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (721-800)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (104-131)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (15-51)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Streptococcus mutans UA159	74.539	100	0.745
clpC	Streptococcus thermophilus LMD-9	71.936	100	0.722
clpC	Streptococcus thermophilus LMG 18311	71.691	100	0.72
clpC	Streptococcus pneumoniae Rx1	65.479	100	0.656
clpC	Streptococcus pneumoniae D39	65.479	100	0.656
clpC	Streptococcus pneumoniae TIGR4	65.356	100	0.654
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	48.623	100	0.499
clpC	Bacillus subtilis subsp. subtilis str. 168	43.614	100	0.445