Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppD   Type   Regulator
Locus tag   RIM74_RS08935 Genome accession   NZ_CP133955
Coordinates   1875439..1876485 (-) Length   348 a.a.
NCBI ID   WP_111689823.1    Uniprot ID   -
Organism   Streptococcus equi subsp. equi strain HTP133     
Function   internalize XIP (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 1821075..1880008 1875439..1876485 within 0


Gene organization within MGE regions


Location: 1821075..1880008
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIM74_RS08660 (RIM74_08660) - 1821838..1822782 (+) 945 WP_012678501.1 magnesium transporter CorA family protein -
  RIM74_RS08665 (RIM74_08665) - 1822807..1822944 (-) 138 WP_154235407.1 hypothetical protein -
  RIM74_RS08670 (RIM74_08670) - 1823041..1823691 (+) 651 WP_012679033.1 DUF1129 domain-containing protein -
  RIM74_RS08680 (RIM74_08680) rpsR 1825391..1825630 (-) 240 WP_002983142.1 30S ribosomal protein S18 -
  RIM74_RS08685 (RIM74_08685) ssbA 1825789..1826277 (-) 489 WP_012679031.1 single-stranded DNA-binding protein Machinery gene
  RIM74_RS08690 (RIM74_08690) rpsF 1826296..1826586 (-) 291 WP_012678504.1 30S ribosomal protein S6 -
  RIM74_RS08695 (RIM74_08695) - 1827648..1827873 (-) 226 Protein_1655 HicB family protein -
  RIM74_RS08700 (RIM74_08700) mutY 1827962..1829110 (+) 1149 WP_012679029.1 A/G-specific adenine glycosylase -
  RIM74_RS08705 (RIM74_08705) - 1829882..1830691 (+) 810 WP_317582809.1 cell surface-anchored protein -
  RIM74_RS08710 (RIM74_08710) - 1830756..1831121 (+) 366 Protein_1658 LPXTG cell wall anchor domain-containing protein -
  RIM74_RS08715 (RIM74_08715) trxA 1831367..1831681 (-) 315 WP_012514992.1 thioredoxin -
  RIM74_RS08720 (RIM74_08720) - 1831861..1833180 (+) 1320 WP_012679026.1 FAD-containing oxidoreductase -
  RIM74_RS08725 (RIM74_08725) - 1833520..1835856 (-) 2337 WP_012679025.1 endonuclease MutS2 -
  RIM74_RS08730 (RIM74_08730) - 1835929..1836474 (-) 546 WP_021320369.1 CvpA family protein -
  RIM74_RS08735 (RIM74_08735) - 1836474..1836785 (-) 312 WP_012514987.1 hypothetical protein -
  RIM74_RS08740 (RIM74_08740) rnhC 1836903..1837811 (+) 909 WP_042356750.1 ribonuclease HIII -
  RIM74_RS08745 (RIM74_08745) lepB 1837836..1838435 (+) 600 WP_012514985.1 signal peptidase I -
  RIM74_RS08750 (RIM74_08750) - 1838664..1841063 (+) 2400 WP_050316029.1 ATP-dependent RecD-like DNA helicase -
  RIM74_RS08755 (RIM74_08755) - 1841159..1841644 (+) 486 WP_012679021.1 hypothetical protein -
  RIM74_RS08760 (RIM74_08760) dinB 1841787..1842890 (-) 1104 WP_012679020.1 DNA polymerase IV -
  RIM74_RS08765 (RIM74_08765) pflB 1843099..1845423 (+) 2325 WP_012678516.1 formate C-acetyltransferase -
  RIM74_RS08770 (RIM74_08770) - 1845728..1846006 (+) 279 WP_042356748.1 hypothetical protein -
  RIM74_RS08775 (RIM74_08775) - 1846170..1847111 (-) 942 WP_012679019.1 serine hydrolase domain-containing protein -
  RIM74_RS08780 (RIM74_08780) - 1847108..1847863 (-) 756 WP_317582810.1 CppA N-terminal domain-containing protein -
  RIM74_RS08785 (RIM74_08785) gla 1848356..1849204 (-) 849 WP_012679017.1 aquaglyceroporin Gla -
  RIM74_RS08790 (RIM74_08790) - 1849306..1849758 (-) 453 WP_012679016.1 universal stress protein -
  RIM74_RS08795 (RIM74_08795) - 1849778..1850977 (-) 1200 WP_317582811.1 MFS transporter -
  RIM74_RS08800 (RIM74_08800) - 1851146..1851805 (+) 660 WP_012514975.1 Crp/Fnr family transcriptional regulator -
  RIM74_RS08805 (RIM74_08805) - 1851826..1854111 (+) 2286 WP_012679014.1 Xaa-Pro dipeptidyl-peptidase -
  RIM74_RS08810 (RIM74_08810) - 1854217..1854609 (-) 393 WP_012679013.1 pyridoxamine 5'-phosphate oxidase family protein -
  RIM74_RS08815 (RIM74_08815) - 1854798..1855020 (-) 223 Protein_1679 helix-turn-helix domain-containing protein -
  RIM74_RS08820 (RIM74_08820) - 1855199..1855573 (+) 375 WP_317582813.1 helix-turn-helix transcriptional regulator -
  RIM74_RS08825 (RIM74_08825) - 1855831..1856508 (-) 678 WP_012679011.1 type II CAAX prenyl endopeptidase Rce1 family protein -
  RIM74_RS08830 (RIM74_08830) - 1857130..1858638 (-) 1509 WP_012679010.1 helix-turn-helix domain-containing protein -
  RIM74_RS08835 (RIM74_08835) - 1858889..1859785 (+) 897 WP_052292771.1 thioester-forming surface-anchored protein -
  RIM74_RS08840 (RIM74_08840) - 1859833..1860045 (+) 213 WP_173476773.1 fibronectin-binding protein -
  RIM74_RS08845 (RIM74_08845) - 1859972..1860778 (+) 807 WP_317582814.1 LPXTG cell wall anchor domain-containing protein -
  RIM74_RS08850 (RIM74_08850) - 1861150..1862196 (-) 1047 WP_317582815.1 HAMP domain-containing sensor histidine kinase -
  RIM74_RS08855 (RIM74_08855) - 1862198..1862884 (-) 687 WP_021320358.1 response regulator transcription factor -
  RIM74_RS08860 (RIM74_08860) - 1863023..1863619 (-) 597 WP_394854531.1 hypothetical protein -
  RIM74_RS08865 (RIM74_08865) - 1864008..1864307 (+) 300 WP_012514952.1 YbaB/EbfC family nucleoid-associated protein -
  RIM74_RS08870 (RIM74_08870) - 1864349..1865071 (-) 723 WP_012679006.1 MerR family transcriptional regulator -
  RIM74_RS08875 (RIM74_08875) - 1865175..1865762 (-) 588 WP_012679005.1 3'-5' exonuclease -
  RIM74_RS08880 (RIM74_08880) - 1865807..1866337 (-) 531 WP_014622285.1 DUF536 domain-containing protein -
  RIM74_RS08885 (RIM74_08885) - 1866463..1867635 (+) 1173 WP_317582816.1 NAD(P)/FAD-dependent oxidoreductase -
  RIM74_RS08890 (RIM74_08890) rpsN 1867829..1868098 (+) 270 WP_012678537.1 30S ribosomal protein S14 -
  RIM74_RS08895 (RIM74_08895) - 1868115..1868336 (-) 222 WP_041790590.1 hypothetical protein -
  RIM74_RS08900 (RIM74_08900) - 1868493..1869521 (-) 1029 WP_042356741.1 YdcF family protein -
  RIM74_RS08905 (RIM74_08905) tsaD 1869543..1870559 (-) 1017 WP_012678539.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  RIM74_RS08910 (RIM74_08910) rimI 1870549..1870974 (-) 426 WP_317582817.1 ribosomal protein S18-alanine N-acetyltransferase -
  RIM74_RS08915 (RIM74_08915) tsaB 1870977..1871675 (-) 699 WP_012679000.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB -
  RIM74_RS08920 (RIM74_08920) - 1871961..1872191 (+) 231 WP_012514942.1 DNA-dependent RNA polymerase subunit epsilon -
  RIM74_RS08925 (RIM74_08925) rnjA 1872193..1873875 (+) 1683 WP_012514941.1 ribonuclease J1 -
  RIM74_RS08930 (RIM74_08930) amiF 1874504..1875439 (-) 936 WP_317582818.1 ATP-binding cassette domain-containing protein Regulator
  RIM74_RS08935 (RIM74_08935) oppD 1875439..1876485 (-) 1047 WP_111689823.1 ABC transporter ATP-binding protein Regulator
  RIM74_RS08940 (RIM74_08940) - 1876497..1877528 (-) 1032 WP_012678997.1 ABC transporter permease -
  RIM74_RS08945 (RIM74_08945) - 1877538..1878452 (-) 915 WP_012678996.1 ABC transporter permease -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 38559.46 Da        Isoelectric Point: 6.6666

>NTDB_id=877882 RIM74_RS08935 WP_111689823.1 1875439..1876485(-) (oppD) [Streptococcus equi subsp. equi strain HTP133]
MTNETILSVKNLHVDFKTYAGDVKAIRDISFELKKGETLAIVGESGSGKSVTTRTLMGLNAKNASISGNICFKGKQLNEL
KEEEWVKVRGNEIAMIFQDPMTSLDPTMTIGMQIAEAIMIHQSIHKTEALKRALDLMRQVGIPNAEEHLKDYPHQWSGGM
RQRAVIAIALAANPDILIADEPTTALDVTIQAQILKLMKDIQSQTASSIIFITHDLGVVAGMADRVAVMYAGKIVEYGTV
DEVFYHPQHPYTWGLLNSMPTTATAAGSLRSIPGTPPDLLNPPKGDAFAARNEFALDIDHIKEPPMFKVSDSHYAATWLL
DERAPKITPPFPIRKRWAKWQEMEERKA

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=877882 RIM74_RS08935 WP_111689823.1 1875439..1876485(-) (oppD) [Streptococcus equi subsp. equi strain HTP133]
ATGACGAATGAAACCATTTTAAGTGTCAAAAACCTCCATGTTGATTTTAAAACCTACGCTGGAGATGTTAAGGCGATTCG
TGATATCAGCTTTGAGCTAAAAAAGGGAGAGACTCTTGCGATTGTGGGAGAATCAGGCTCAGGGAAATCTGTAACCACTC
GCACGCTGATGGGGTTAAATGCTAAGAATGCAAGTATTTCAGGGAATATTTGCTTTAAGGGCAAGCAGCTCAATGAGCTG
AAGGAGGAGGAATGGGTCAAGGTGCGTGGCAATGAAATTGCAATGATCTTCCAGGATCCGATGACCAGCCTTGATCCTAC
CATGACAATTGGCATGCAGATTGCAGAGGCAATAATGATTCATCAAAGCATTCATAAGACAGAAGCCTTGAAGCGTGCTT
TAGACCTGATGCGTCAGGTTGGTATCCCAAATGCTGAGGAGCACCTTAAGGATTACCCACATCAGTGGTCTGGGGGCATG
CGGCAACGGGCTGTTATTGCCATTGCTCTAGCTGCCAATCCTGATATTTTGATTGCAGATGAGCCGACAACAGCTCTTGA
TGTTACCATTCAGGCCCAGATTTTGAAGCTGATGAAGGATATTCAGTCTCAGACCGCATCATCGATTATCTTTATTACGC
ATGACCTTGGTGTTGTTGCTGGAATGGCAGATCGCGTTGCTGTTATGTATGCTGGAAAGATTGTCGAATATGGAACGGTT
GACGAGGTATTTTATCATCCGCAGCACCCTTATACCTGGGGCTTGCTCAATTCGATGCCAACAACAGCTACTGCAGCAGG
TAGCTTGAGGTCTATTCCCGGAACGCCGCCAGATTTATTAAACCCTCCAAAGGGAGATGCTTTTGCTGCCCGTAATGAGT
TTGCCCTAGACATTGACCATATCAAAGAGCCTCCAATGTTCAAGGTAAGTGACAGCCACTACGCAGCAACCTGGTTGCTA
GATGAGCGTGCTCCTAAAATAACCCCTCCATTCCCAATCCGCAAGCGTTGGGCAAAATGGCAGGAAATGGAAGAGAGGAA
GGCTTAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(235-297)

ABC transporter (ABC_tran)

(27-183)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppD Streptococcus mutans UA159

79.539

99.713

0.793
  amiE Streptococcus salivarius strain HSISS4

56.325

95.402

0.537
  amiE Streptococcus thermophilus LMG 18311

56.325

95.402

0.537
  amiE Streptococcus thermophilus LMD-9

56.325

95.402

0.537